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NCBI: 02-MAR-2017

Summary[edit source | edit]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS07225 [old locus tag: SACOL1419 ]
  • pan locus tag?: SAUPAN003790000
  • symbol: SACOL_RS07225
  • pan gene symbol?:
  • synonym:
  • product: oligoendopeptidase F

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SACOL_RS07225 [old locus tag: SACOL1419 ]
  • symbol: SACOL_RS07225
  • product: oligoendopeptidase F
  • replicon: chromosome
  • strand: +
  • coordinates: 1429600..1431414
  • length: 1815
  • essential: unknown

Accession numbers[edit source | edit]

  • Location: NC_002951 (1429600..1431414) NCBI
  • MicrobesOnline:

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
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    301
    361
    421
    481
    541
    601
    661
    721
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    841
    901
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    1021
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    1141
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    1801
    ATGTCTCAAGGTTTACCTTTAAGAGAAGATGTTCCTGTTTCAGAAACATGGGATTTAGTA
    GACTTATTTAAAGATGATCAACAATATTATGAAAGTATTGACGCTCTAGTACAACAAGCA
    AATCAATTTCATCATACATATGCAACAACATTAAATTCAATCGAACAAATTAATACTGCT
    TTAGCTGAATTAGAAAATATTTTAATTGCCTTAGATCGCTTAAGTAATTATGCAGAACTA
    CGTTTAAGTGTAGATACTAGTAATATCGAGGCACAAGTATTGAGCGCTAAATTATCTACT
    ACATACGGTAAAATTGTTAGCCAATTATCATTTGTAGAGTCAGAAATACTTGAATTACCA
    GAAGAAATACTTCAACAATTAGAAGAATCATGTCCATATCAACACTATATTAAACAGTTA
    ATAAAACAAAAGCCATTCCAATTATCTGCGTCGGTAGAACAAGTATTAGCAACTTTATCA
    CCTACGCTAAACAGTCCTTACGATTTATACGGCACGACAAAAATGCTAGATATTACATTC
    GATTCATTTGAACATGATGGTACAACGTACCCTGTCGACTATGCTACGTTTGAAAATGAT
    TATGAAGATAATAAAGATCCTGAGTTTAGACGTAAAAGTTTCAAATCGTTTAGCGATGGG
    ATTCGAAAATATCAGCATACTACCGCGGCTACATATAATATGCAAGTACAACAAGAAAAA
    ATTGAAGCTGATTTACGTGGATTTGAATCAGTCATCGATTATTTATTACATAGTCAAGAA
    GTAACGCGTGATATGTTTGACCGTCAAATCGATATGATTATGCGTGACTTGGCACCAGTT
    ATGCAGAAATATGCTAAACTTTTACAACGTATTCACGGATTAGATAACATGCGTTTTGAA
    GACTTGAAGATTTCTGTAGACCCTGATTATGAACCAGAGATTTCAATTGAAGACTCAAAA
    AATTATATTTTCGGTGCGTTAAGTGTTTTAGGTGATGACTATACAAACATGTTACGTGAA
    GCATACGATCAGCGATGGATTGATTTTGCACAAAATAAAGGTAAAGATACAGGCGCATTT
    TGTGCAAGTCCATACTTTACACATTCATATGTGTTTATTTCTTGGACTGGTAAAATGGCT
    GAAGCATTTGTCTTAGCACATGAATTAGGTCATGCAGGTCATTTTACATTAGCTCAAAAA
    CATCAACCATATCTTGAATCAGAAGCATCAATGTACTTTGTTGAAGCCCCTTCTACAATG
    AATGAAATGTTGATGGCCAATTATTTATTTAACACAAGTGATAATCCAAGATTTAAGCGT
    TGGATTATTGGCTCAATTTTATCTAGAACATATTATCATAATATGGTTACCCATTTATTA
    GAAGCTGCTTATCAACGTGAAGTGTATCACAAAGTAGATCAAGGTGAATCTTTAAATGCG
    CCGACATTAAATGAAATAATGCTAAATGTTTATAAACAATTTTTTGGAGATGCAGTAGAC
    ATGACTGAGGGTGCTGAATTAACATGGATGCGTCAACCTCATTACTATATGGGATTATAT
    TCGTATACGTATTCTGCTGGCTTAACAATCGGAACTGTCGTTTCTCAAAAGATTAAAAAT
    GAAGGCCAACCAGCTGTTGATGCTTGGTTAGAAACATTGAAAAAAGGTGGTAGTGTATCA
    CCTGTCGAACTTGCAAACATTGCAGGTGTAGACATTACTACAGAACAGCCACTTAAATCT
    ACAATTCAATATATTTCTGATTTAGTCGATGAAGTTGAAAAATTAACAGATGAAATTGAG
    CAAGCAAATAACTAA
    60
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    1815

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SACOL_RS07225 [old locus tag: SACOL1419 ]
  • symbol: SACOL_RS07225
  • description: oligoendopeptidase F
  • length: 604
  • theoretical pI: 4.38757
  • theoretical MW: 69298.3
  • GRAVY: -0.401656

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    Genetic information processingProtein fateDegradation of proteins, peptides, and glycopeptidesoligoendopeptidase F (TIGR00181; EC 3.4.24.-; HMM-score: 721.6)
    oligoendopeptidase, pepF/M3 family (TIGR02290; EC 3.4.24.-; HMM-score: 283.6)
    oligoendopeptidase, M3 family (TIGR02289; EC 3.4.24.-; HMM-score: 66.3)
  • TheSEED:
  • PFAM:
    Peptidase_MA (CL0126) Peptidase_M3; Peptidase family M3 (PF01432; HMM-score: 124.8)
    no clan definedPeptidase_M3_N; Oligopeptidase F (PF08439; HMM-score: 54.1)
    BLOC1_2; Biogenesis of lysosome-related organelles complex-1 subunit 2 (PF10046; HMM-score: 8.9)
    LOH1CR12; Tumour suppressor protein (PF10158; HMM-score: 8.3)
    EsxAB (CL0352) WXG100; Proteins of 100 residues with WXG (PF06013; HMM-score: 6.5)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.97
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0.01
    • Extracellular Score: 0.02
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • Ymax: 0.138
    • Ymax_pos: 63
    • Cmax: 0.27
    • Cmax_pos: 63
    • Smax: 0.09
    • Smax_pos: 62
    • Smean: 0.067
    • D: 0.11
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

  • GI: 445999714 NCBI
  • RefSeq: WP_000077569 NCBI
  • UniProt:

Protein sequence[edit source | edit]

  • MSQGLPLREDVPVSETWDLVDLFKDDQQYYESIDALVQQANQFHHTYATTLNSIEQINTALAELENILIALDRLSNYAELRLSVDTSNIEAQVLSAKLSTTYGKIVSQLSFVESEILELPEEILQQLEESCPYQHYIKQLIKQKPFQLSASVEQVLATLSPTLNSPYDLYGTTKMLDITFDSFEHDGTTYPVDYATFENDYEDNKDPEFRRKSFKSFSDGIRKYQHTTAATYNMQVQQEKIEADLRGFESVIDYLLHSQEVTRDMFDRQIDMIMRDLAPVMQKYAKLLQRIHGLDNMRFEDLKISVDPDYEPEISIEDSKNYIFGALSVLGDDYTNMLREAYDQRWIDFAQNKGKDTGAFCASPYFTHSYVFISWTGKMAEAFVLAHELGHAGHFTLAQKHQPYLESEASMYFVEAPSTMNEMLMANYLFNTSDNPRFKRWIIGSILSRTYYHNMVTHLLEAAYQREVYHKVDQGESLNAPTLNEIMLNVYKQFFGDAVDMTEGAELTWMRQPHYYMGLYSYTYSAGLTIGTVVSQKIKNEGQPAVDAWLETLKKGGSVSPVELANIAGVDITTEQPLKSTIQYISDLVDEVEKLTDEIEQANN

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

  • SACOL_RS07225 no polycistronic organisation predicted

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]