NCBI: 02-MAR-2017
Contents
⊟Summary[edit source | edit]
- organism: Staphylococcus aureus COL
- locus tag: SACOL_RS07425 [old locus tag: SACOL1455 ]
- pan locus tag?: SAUPAN003849000
- symbol: SACOL_RS07425
- pan gene symbol?: ctpA
- synonym:
- product: serine protease
⊟Genome View[edit source | edit]
⊟Gene[edit source | edit]
⊟General[edit source | edit]
- type: CDS
- locus tag: SACOL_RS07425 [old locus tag: SACOL1455 ]
- symbol: SACOL_RS07425
- product: serine protease
- replicon: chromosome
- strand: -
- coordinates: 1469477..1470967
- length: 1491
- essential: unknown
⊟Accession numbers[edit source | edit]
- Location: NC_002951 (1469477..1470967) NCBI
- MicrobesOnline:
⊟Phenotype[edit source | edit]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit source | edit]
- 1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
1441ATGGATGATAAGCAACACACATCTTCATCCGATGATGAACGCGCTGAAATTGCAACAAGC
AATCAAGACCAAGAAACTAATTCATCGAAACGCGTTCACTTAAAACGTTGGCAATTCATA
TCAATATTAATTGGTACAATCCTAATAACAGCTGTCATCACAGTTGTTGCATATATTTTT
ATAAATCAAAAAATAAGTGGTTTAAACAAAACTGATCAATCAAACTTAAATAAAATTGAA
AATGTGTATAAAATCTTAAATAGTGATTATTACAAAAAACAGGACTCTGACAAGTTAAGT
AAAGCTGCAATTGATGGCATGGTCAAAGAATTAAAAGATCCTTATTCTGAATATTTAACA
AAAGAACAAACGAAATCCTTTAATGAAGGTGTTTCAGGTGATTTTGTAGGTATTGGTGCA
GAAATGCAAAAGAAAAATGATCAAATTATGGTTACTAGTCCTATGAAGGGATCTCCAGCA
GAACGTGCTGGCATTCGTCCTAAAGATGTCATTACTAAAGTAAATGGAAAATCAATTAAA
GGTAAAGCATTAGATGAAGTTGTCAAAGATGTTCGTGGTAAAGAAAACACTGAAGTCACT
TTAACTGTTCAACGAGGTAGTGAAGAAAAAGACGTTAAGATTAAACGTGAAAAAATTCAT
GTTAAAAGTGTTGAGTATAAGAAAAAAGGTAAAGTTGGAGTTATTACTATTAATAAATTC
CAGAATGATACATCAGGTGAATTGAAAGATGCAGTTCTAAAAGCTCACAAAGATGGTTTG
AAAAAGATTGTTTTAGATTTAAGAAATAATCCAGGTGGACTACTAGATGAAGCTGTTAAA
ATGGCAAATATTTTTATCGATAAAGGAAAAACTGTTGTTAAACTAGAAAAAGGTAAAGAT
ACTGAAGCAATTCAAACTTCTAATGATGCGTTAAAAGAAGCGAAAGACATGGATATATCC
ATCTTAGTGAATGAAGGTTCAGCTAGCGCTTCTGAAGTGTTTACTGGTGCGCTAAAAGAC
TATAATAAAGCTAAAGTTTATGGGTCAAAAACATTCGGCAAAGGTGTCGTACAAACTACA
AGAGAGTTTAAGGATGGTTCATTGTTAAAATATACTGAAATGAAATGGTTAACGCCAGAT
GGTCATTATATTCACGGTAAAGGCATTAAACCAGACGTTACTATTGACACACCTAAATAT
CAATCTTTAAATGTCATTCCTAATACGAAAACATTTAAAGTTGGAGACGATGATAAAAAT
ATTAAAACTATTAAAATTGGTTTATCAGCTTTAGGTTATAAAGTTGATAATGAATCAACG
CAATTTGATAAAGCTTTAGAAAATCAAGTTAAAGCTTTCCAACAAGCGAATAAACTTGAG
GTAACTGGTGAATTTAATAAAGAAACGAATAATAAATTTACTGAGTTATTAGTTGAAAAA
GCTAATAAACATGATGATGTTCTCGATAAGTTGATTAATATTTTAAAATAA60
120
180
240
300
360
420
480
540
600
660
720
780
840
900
960
1020
1080
1140
1200
1260
1320
1380
1440
1491
⊟Protein[edit source | edit]
⊟General[edit source | edit]
- locus tag: SACOL_RS07425 [old locus tag: SACOL1455 ]
- symbol: SACOL_RS07425
- description: serine protease
- length: 496
- theoretical pI: 9.7491
- theoretical MW: 55276.6
- GRAVY: -0.639718
⊟Function[edit source | edit]
- reaction: EC 3.4.21.-? ExPASy
- TIGRFAM: Protein fateDegradation of proteins, peptides, and glycopeptidesC-terminal processing peptidase (TIGR00225; EC 3.4.21.-; HMM-score: 344)Protein fateProtein modification and repairC-terminal processing peptidase (TIGR00225; EC 3.4.21.-; HMM-score: 344)putative carboxyl-terminal-processing protease, deltaproteobacterial (TIGR03900; EC 3.4.21.-; HMM-score: 264.2)Protein fateDegradation of proteins, peptides, and glycopeptidespeptidase Do (TIGR02037; EC 3.4.21.-; HMM-score: 36.4)Protein fateProtein folding and stabilizationpeptidase Do (TIGR02037; EC 3.4.21.-; HMM-score: 36.4)Protein fateDegradation of proteins, peptides, and glycopeptidesRIP metalloprotease RseP (TIGR00054; EC 3.4.24.-; HMM-score: 27)Protein fateDegradation of proteins, peptides, and glycopeptidesperiplasmic serine peptidase DegS (TIGR02038; EC 3.4.21.-; HMM-score: 20.2)Regulatory functionsProtein interactionsperiplasmic serine peptidase DegS (TIGR02038; EC 3.4.21.-; HMM-score: 20.2)Cellular processesSporulation and germinationspore cortex-lytic enzyme (TIGR02869; HMM-score: 18.7)Regulatory functionsProtein interactionsanti-anti-sigma factor (TIGR00377; HMM-score: 12.1)
- TheSEED:
- PFAM: ClpP_crotonase (CL0127) Peptidase_S41; Peptidase family S41 (PF03572; HMM-score: 165.5)PDZ-like (CL0466) PDZ_2; PDZ domain (PF13180; HMM-score: 56.2)PDZ; PDZ domain (Also known as DHR or GLGF) (PF00595; HMM-score: 49.8)PGBD (CL0244) PG_binding_1; Putative peptidoglycan binding domain (PF01471; HMM-score: 46.5)PDZ-like (CL0466) Tricorn_PDZ; Tricorn protease PDZ domain (PF14685; HMM-score: 17)PGBD (CL0244) PG_binding_2; Putative peptidoglycan binding domain (PF08823; HMM-score: 14.6)C_Lectin (CL0056) Ly49; Ly49-like protein, N-terminal region (PF08391; HMM-score: 13)no clan definedDUF3394; Domain of unknown function (DUF3394) (PF11874; HMM-score: 9.2)
⊟Structure, modifications & interactions[edit source | edit]
- domains:
- modifications:
- cofactors:
- effectors:
- protein partners:
⊟Localization[edit source | edit]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0.17
- Cytoplasmic Membrane Score: 9.51
- Cellwall Score: 0.16
- Extracellular Score: 0.15
- Internal Helix: 1
- LocateP:
- SignalP: no predicted signal peptide
- Ymax: 0.113
- Ymax_pos: 50
- Cmax: 0.116
- Cmax_pos: 58
- Smax: 0.156
- Smax_pos: 39
- Smean: 0.09
- D: 0.104
- predicted transmembrane helices (TMHMM): 1
⊟Accession numbers[edit source | edit]
⊟Protein sequence[edit source | edit]
- MDDKQHTSSSDDERAEIATSNQDQETNSSKRVHLKRWQFISILIGTILITAVITVVAYIFINQKISGLNKTDQSNLNKIENVYKILNSDYYKKQDSDKLSKAAIDGMVKELKDPYSEYLTKEQTKSFNEGVSGDFVGIGAEMQKKNDQIMVTSPMKGSPAERAGIRPKDVITKVNGKSIKGKALDEVVKDVRGKENTEVTLTVQRGSEEKDVKIKREKIHVKSVEYKKKGKVGVITINKFQNDTSGELKDAVLKAHKDGLKKIVLDLRNNPGGLLDEAVKMANIFIDKGKTVVKLEKGKDTEAIQTSNDALKEAKDMDISILVNEGSASASEVFTGALKDYNKAKVYGSKTFGKGVVQTTREFKDGSLLKYTEMKWLTPDGHYIHGKGIKPDVTIDTPKYQSLNVIPNTKTFKVGDDDKNIKTIKIGLSALGYKVDNESTQFDKALENQVKAFQQANKLEVTGEFNKETNNKFTELLVEKANKHDDVLDKLINILK
⊟Experimental data[edit source | edit]
- experimentally validated: no data available
⊟Expression & Regulation[edit source | edit]
⊟Operon[edit source | edit]
- SACOL_RS07425 no polycistronic organisation predicted
⊟Regulation[edit source | edit]
- sigma factor:
- regulator:
⊟Transcription pattern[edit source | edit]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit source | edit]
- Aureolib: no data available
⊟Protein stability[edit source | edit]
- half-life: no data available
⊟Biological Material[edit source | edit]
⊟Mutants[edit source | edit]
⊟Expression vector[edit source | edit]
⊟lacZ fusion[edit source | edit]
⊟GFP fusion[edit source | edit]
⊟two-hybrid system[edit source | edit]
⊟FLAG-tag construct[edit source | edit]
⊟Antibody[edit source | edit]
⊟Other Information[edit source | edit]
You are kindly invited to share additional interesting facts.
⊟Literature[edit source | edit]
⊟References[edit source | edit]
⊟Relevant publications[edit source | edit]