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NCBI: 02-MAR-2017

Summary[edit source | edit]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS08485 [old locus tag: SACOL1663 ]
  • pan locus tag?: SAUPAN004204000
  • symbol: SACOL_RS08485
  • pan gene symbol?:
  • synonym:
  • product: allophanate hydrolase

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SACOL_RS08485 [old locus tag: SACOL1663 ]
  • symbol: SACOL_RS08485
  • product: allophanate hydrolase
  • replicon: chromosome
  • strand: -
  • coordinates: 1691825..1692835
  • length: 1011
  • essential: unknown

Accession numbers[edit source | edit]

  • Location: NC_002951 (1691825..1692835) NCBI
  • MicrobesOnline:

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    ATGTCAATTAAGATTTTACAACCAGGTCTCTTTTCAACGGTACAAGATCTAGGAAGAATA
    GGTTATGAACATATTGGATTTTCAGGCGCAGGTGCCATGGATCAATTTAGTTTTAAGGTT
    GCGCAGTCATTAATTAACAATGATGGTCCAGCGATTGAATATACTTTGATTGGTCCTACC
    ATTCAATTTAATACGCAAAATACATTTGTTATAACCGGTGGTAGTATTAATGCTTCGCTA
    AATAATAAAACTATATCAATGAATTCTGTCATATTAGCTGAGAAAGGTGACATTTTAAAA
    ATAGGTGCTATAACCAAAGGTGCACGCGGTTATCTTACTTTTGGTCATTCTATCAACGTA
    CCTTCTATTGCTGAAAGTTATGCAACACATACCCGAAGCAGTATAGGAGGATTCAAAGGT
    AGAAAGTTATTAGCTGATGATGTAATAACAGTGAAAATAAATAATGACTTTAAAGAAAAC
    ATTGGAAAGACGATTCATTTACAGGACGATTTATTGCCAGAAAATAATATTATACACATT
    CTTCAAGGACCTCAATTCGAGGCATTTTCTGAAGAGGCTAGAGCGAAAATTGTAAATCAT
    CCATATTTAATTACTGAACAATCAGACCGTATGGGCTATCGTTTGGAAGGTGACAGCGTT
    GCACCAATTAATCAAGCAGATATCATTTCTGAACCGGTTGCTCTTGGTAGTGTTCAGGTA
    CCAAATGATGGTCAACCTATTATTCTGCTTAATGATAAACAAACGATAGGTGGTTATACC
    AAAATTGCAACTGTATGCAAATTTGATCTGCCAAAGTTAGCACAGATGAAACCACAAGAT
    ACAATTCAATTTAAATGGATATCATTCCAAGAAGCTGTAGATAAGAATCGGGAACAAATG
    TCTCTGTTTAATGAAATTCTTAAGAGTCATCAAAAGACTCCAATTTTTGATACATCTAGC
    TTGCGACATACTTCGAAAAAATTAGCAACAATTTTAAAAGGGGATTTGTAA
    60
    120
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    420
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    1011

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SACOL_RS08485 [old locus tag: SACOL1663 ]
  • symbol: SACOL_RS08485
  • description: allophanate hydrolase
  • length: 336
  • theoretical pI: 7.29435
  • theoretical MW: 36901.9
  • GRAVY: -0.178869

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    Unknown functionGeneralbiotin-dependent carboxylase uncharacterized domain (TIGR00724; HMM-score: 267.5)
    MetabolismCentral intermediary metabolismNitrogen metabolismurea carboxylase (TIGR02712; EC 6.3.4.6; HMM-score: 170)
  • TheSEED:
  • PFAM:
    Cyclophil-like (CL0475) CT_A_B; Carboxyltransferase domain, subdomain A and B (PF02626; HMM-score: 259.7)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • Ymax: 0.135
    • Ymax_pos: 33
    • Cmax: 0.174
    • Cmax_pos: 33
    • Smax: 0.181
    • Smax_pos: 1
    • Smean: 0.124
    • D: 0.13
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

  • GI: 445945461 NCBI
  • RefSeq: WP_000023316 NCBI
  • UniProt:

Protein sequence[edit source | edit]

  • MSIKILQPGLFSTVQDLGRIGYEHIGFSGAGAMDQFSFKVAQSLINNDGPAIEYTLIGPTIQFNTQNTFVITGGSINASLNNKTISMNSVILAEKGDILKIGAITKGARGYLTFGHSINVPSIAESYATHTRSSIGGFKGRKLLADDVITVKINNDFKENIGKTIHLQDDLLPENNIIHILQGPQFEAFSEEARAKIVNHPYLITEQSDRMGYRLEGDSVAPINQADIISEPVALGSVQVPNDGQPIILLNDKQTIGGYTKIATVCKFDLPKLAQMKPQDTIQFKWISFQEAVDKNREQMSLFNEILKSHQKTPIFDTSSLRHTSKKLATILKGDL

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

  • SACOL_RS08485 no polycistronic organisation predicted

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]