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NCBI: 02-MAR-2017

Summary[edit source | edit]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS10880 [old locus tag: SACOL2080 ]
  • pan locus tag?: SAUPAN005365000
  • symbol: SACOL_RS10880
  • pan gene symbol?:
  • synonym:
  • product: phosphohydrolase

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SACOL_RS10880 [old locus tag: SACOL2080 ]
  • symbol: SACOL_RS10880
  • product: phosphohydrolase
  • replicon: chromosome
  • strand: +
  • coordinates: 2146164..2146811
  • length: 648
  • essential: unknown

Accession numbers[edit source | edit]

  • Location: NC_002951 (2146164..2146811) NCBI
  • MicrobesOnline:

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
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    481
    541
    601
    ATGCAACAATCAGACGTCATTAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAAT
    GATTATACAGGCCATGATATTGCGCATGTATATCGTGTCACTGCTTTAGCTAAATCAATC
    GCTGAAAATGAAGGTGTTAATGATACTTTAGTCATTGAACTCGCATGTTTGCTTCATGAT
    ACCGTTGACGAAAAAGTTGTAGATGCTAACAAACAATATGTTGAATTGAAGTCATTTTTA
    TCTTCTTTATCACTATCAACCGAAGATCAAGAGCACATTTTATTTATTATTAATAATATG
    AGCTATCGCAATGGCAAAAATGATCATGTCACTTTATCTTTAGAAGGTCAAATTGTCAGG
    GATGCAGATCGTCTTGATGCTATAGGCGCTATAGGTGTTGCACGAACATTTCAATTTGCA
    GGACACTTTGGTGAACCTATGTGGACAGAACATATGTCACTAGATAAGATTAATGATGAT
    TTAGTTGAACAGTTGCCACCATCTGCAATTAAACATTTCTTTGAAAAATTACTTAAGTTA
    GAATCTTTAATGCATACAGATACGGCGAAGATGATTGCTAAAGAACGTCACGACTTTATG
    ATGATGTACTTGAAACAGTTTTTTACGGAATGGAATTGTCACGACTAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    648

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SACOL_RS10880 [old locus tag: SACOL2080 ]
  • symbol: SACOL_RS10880
  • description: phosphohydrolase
  • length: 215
  • theoretical pI: 5.11452
  • theoretical MW: 24633.8
  • GRAVY: -0.296744

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    HDIG domain (TIGR00277; HMM-score: 15.3)
    Genetic information processingMobile and extrachromosomal element functionsProphage functionsphage major tail protein, TP901-1 family (TIGR02126; HMM-score: 14.3)
  • TheSEED:
  • PFAM:
    HD_PDEase (CL0237) HD; HD domain (PF01966; HMM-score: 30.3)
    no clan definedDUF2363; Uncharacterized conserved protein (DUF2363) (PF10155; HMM-score: 13.1)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • Ymax: 0.105
    • Ymax_pos: 11
    • Cmax: 0.121
    • Cmax_pos: 38
    • Smax: 0.187
    • Smax_pos: 2
    • Smean: 0.105
    • D: 0.105
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

  • GI: 447110373 NCBI
  • RefSeq: WP_001187629 NCBI
  • UniProt:

Protein sequence[edit source | edit]

  • MQQSDVISAAKKYMESIHQNDYTGHDIAHVYRVTALAKSIAENEGVNDTLVIELACLLHDTVDEKVVDANKQYVELKSFLSSLSLSTEDQEHILFIINNMSYRNGKNDHVTLSLEGQIVRDADRLDAIGAIGVARTFQFAGHFGEPMWTEHMSLDKINDDLVEQLPPSAIKHFFEKLLKLESLMHTDTAKMIAKERHDFMMMYLKQFFTEWNCHD

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

  • SACOL_RS10880 no polycistronic organisation predicted

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]