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NCBI: 02-MAR-2017

⊟Summary[edit source | edit]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS10935 [old locus tag: SACOL2090 ]
  • pan locus tag?: SAUPAN005386000
  • symbol: SACOL_RS10935
  • pan gene symbol?: ywpF
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit source | edit]

⊟Gene[edit source | edit]

⊟General[edit source | edit]

  • type: CDS
  • locus tag: SACOL_RS10935 [old locus tag: SACOL2090 ]
  • symbol: SACOL_RS10935
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 2153508..2154011
  • length: 504
  • essential: unknown

⊟Accession numbers[edit source | edit]

  • Location: NC_002951 (2153508..2154011) NCBI
  • MicrobesOnline:

⊟Phenotype[edit source | edit]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    ATGACCTTAAATCTTCTAAATAATTCAAAAATCATAAATATTAAACTAATGGGATGTGGG
    AATATGAAAACTTTTAAAGCAGTAAGGTTTCAAATTGTGAATGAACACGGCAGAATTATA
    GAATATGAATTAGAAGATGGCGTAATAATTAATAAAGAGGAAAGTGGCACGGGTTGGTTG
    CTTGAAATTGTCATTTCTAATGAGCATTATGAAACATTTAAGGAATATCAAGACAATGAA
    CAGTTATTGGATATTCGTGTCGTCATCACGCGTCCAGCCAATGATCCAGCTTTATTTGAA
    TCTACTGTGAAAAGTATTAAAAATTTTAAAACAACAATGTCTATCGTATTTGAATGTCAT
    ATTTACACTTTACGTCAACAGTATGCTGAAAGTTTATTAGAACAACTTATTGATGATGGA
    TTATCTGGTGAAGAATTAAAAAAATCATTTAATCGAATGATGCAGTCTAAACCAAAGTTA
    AAGGATGAAAAATTAGAAGAGTAA
    60
    120
    180
    240
    300
    360
    420
    480
    504

⊟Protein[edit source | edit]

⊟General[edit source | edit]

  • locus tag: SACOL_RS10935 [old locus tag: SACOL2090 ]
  • symbol: SACOL_RS10935
  • description: hypothetical protein
  • length: 167
  • theoretical pI: 4.95122
  • theoretical MW: 19422.2
  • GRAVY: -0.410778

⊟Function[edit source | edit]

  • TIGRFAM:
  • TheSEED:
  • PFAM:
    no clan definedYwpF; YwpF-like protein (PF14183; HMM-score: 163.5)

⊟Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

⊟Localization[edit source | edit]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • Ymax: 0.184
    • Ymax_pos: 28
    • Cmax: 0.165
    • Cmax_pos: 28
    • Smax: 0.396
    • Smax_pos: 11
    • Smean: 0.261
    • D: 0.214
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit source | edit]

  • GI:
  • RefSeq: WP_001789631 NCBI
  • UniProt:

⊟Protein sequence[edit source | edit]

  • MTLNLLNNSKIINIKLMGCGNMKTFKAVRFQIVNEHGRIIEYELEDGVIINKEESGTGWLLEIVISNEHYETFKEYQDNEQLLDIRVVITRPANDPALFESTVKSIKNFKTTMSIVFECHIYTLRQQYAESLLEQLIDDGLSGEELKKSFNRMMQSKPKLKDEKLEE

⊟Experimental data[edit source | edit]

  • experimentally validated: no data available

⊟Expression & Regulation[edit source | edit]

⊟Operon[edit source | edit]

  • SACOL_RS10935 no polycistronic organisation predicted

⊟Regulation[edit source | edit]

  • sigma factor:
  • regulator:

⊟Transcription pattern[edit source | edit]

⊟Protein synthesis (provided by Aureolib)[edit source | edit]

⊟Protein stability[edit source | edit]

  • half-life: no data available

⊟Biological Material[edit source | edit]

⊟Mutants[edit source | edit]

⊟Expression vector[edit source | edit]

⊟lacZ fusion[edit source | edit]

⊟GFP fusion[edit source | edit]

⊟two-hybrid system[edit source | edit]

⊟FLAG-tag construct[edit source | edit]

⊟Antibody[edit source | edit]

⊟Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

⊟Literature[edit source | edit]

⊟References[edit source | edit]

⊟Relevant publications[edit source | edit]

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