NCBI: 02-MAR-2017
Contents
⊟Summary[edit source | edit]
- organism: Staphylococcus aureus COL
- locus tag: SACOL_RS10935 [old locus tag: SACOL2090 ]
- pan locus tag?: SAUPAN005386000
- symbol: SACOL_RS10935
- pan gene symbol?: ywpF
- synonym:
- product: hypothetical protein
⊟Genome View[edit source | edit]
⊟Gene[edit source | edit]
⊟General[edit source | edit]
- type: CDS
- locus tag: SACOL_RS10935 [old locus tag: SACOL2090 ]
- symbol: SACOL_RS10935
- product: hypothetical protein
- replicon: chromosome
- strand: +
- coordinates: 2153508..2154011
- length: 504
- essential: unknown
⊟Accession numbers[edit source | edit]
- Location: NC_002951 (2153508..2154011) NCBI
- MicrobesOnline:
⊟Phenotype[edit source | edit]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit source | edit]
- 1
61
121
181
241
301
361
421
481ATGACCTTAAATCTTCTAAATAATTCAAAAATCATAAATATTAAACTAATGGGATGTGGG
AATATGAAAACTTTTAAAGCAGTAAGGTTTCAAATTGTGAATGAACACGGCAGAATTATA
GAATATGAATTAGAAGATGGCGTAATAATTAATAAAGAGGAAAGTGGCACGGGTTGGTTG
CTTGAAATTGTCATTTCTAATGAGCATTATGAAACATTTAAGGAATATCAAGACAATGAA
CAGTTATTGGATATTCGTGTCGTCATCACGCGTCCAGCCAATGATCCAGCTTTATTTGAA
TCTACTGTGAAAAGTATTAAAAATTTTAAAACAACAATGTCTATCGTATTTGAATGTCAT
ATTTACACTTTACGTCAACAGTATGCTGAAAGTTTATTAGAACAACTTATTGATGATGGA
TTATCTGGTGAAGAATTAAAAAAATCATTTAATCGAATGATGCAGTCTAAACCAAAGTTA
AAGGATGAAAAATTAGAAGAGTAA60
120
180
240
300
360
420
480
504
⊟Protein[edit source | edit]
⊟General[edit source | edit]
- locus tag: SACOL_RS10935 [old locus tag: SACOL2090 ]
- symbol: SACOL_RS10935
- description: hypothetical protein
- length: 167
- theoretical pI: 4.95122
- theoretical MW: 19422.2
- GRAVY: -0.410778
⊟Function[edit source | edit]
- reaction:
- TIGRFAM:
- TheSEED:
- PFAM: no clan definedYwpF; YwpF-like protein (PF14183; HMM-score: 163.5)
⊟Structure, modifications & interactions[edit source | edit]
- domains:
- modifications:
- cofactors:
- effectors:
- protein partners:
⊟Localization[edit source | edit]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- LocateP:
- SignalP: no predicted signal peptide
- Ymax: 0.184
- Ymax_pos: 28
- Cmax: 0.165
- Cmax_pos: 28
- Smax: 0.396
- Smax_pos: 11
- Smean: 0.261
- D: 0.214
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit source | edit]
- GI:
- RefSeq: WP_001789631 NCBI
- UniProt:
⊟Protein sequence[edit source | edit]
- MTLNLLNNSKIINIKLMGCGNMKTFKAVRFQIVNEHGRIIEYELEDGVIINKEESGTGWLLEIVISNEHYETFKEYQDNEQLLDIRVVITRPANDPALFESTVKSIKNFKTTMSIVFECHIYTLRQQYAESLLEQLIDDGLSGEELKKSFNRMMQSKPKLKDEKLEE
⊟Experimental data[edit source | edit]
- experimentally validated: no data available
⊟Expression & Regulation[edit source | edit]
⊟Operon[edit source | edit]
- SACOL_RS10935 no polycistronic organisation predicted
⊟Regulation[edit source | edit]
- sigma factor:
- regulator:
⊟Transcription pattern[edit source | edit]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit source | edit]
- Aureolib: no data available
⊟Protein stability[edit source | edit]
- half-life: no data available
⊟Biological Material[edit source | edit]
⊟Mutants[edit source | edit]
⊟Expression vector[edit source | edit]
⊟lacZ fusion[edit source | edit]
⊟GFP fusion[edit source | edit]
⊟two-hybrid system[edit source | edit]
⊟FLAG-tag construct[edit source | edit]
⊟Antibody[edit source | edit]
⊟Other Information[edit source | edit]
You are kindly invited to share additional interesting facts.
⊟Literature[edit source | edit]
⊟References[edit source | edit]
⊟Relevant publications[edit source | edit]