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NCBI: 02-MAR-2017

Summary[edit source | edit]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS11375 [old locus tag: SACOL2164 ]
  • pan locus tag?: SAUPAN005564000
  • symbol: SACOL_RS11375
  • pan gene symbol?:
  • synonym:
  • product: membrane protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SACOL_RS11375 [old locus tag: SACOL2164 ]
  • symbol: SACOL_RS11375
  • product: membrane protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2242249..2243442
  • length: 1194
  • essential: unknown

Accession numbers[edit source | edit]

  • Location: NC_002951 (2242249..2243442) NCBI
  • MicrobesOnline:

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
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    481
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    1021
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    1141
    ATGCCATTTTTAATTGTGACGATAATTACTTTATCGGGTATCATAACTCTGATTTGTTCA
    ACTATTTTAAAAGATAAATTGAAACCTGACGGGCTAATGAACAATGCTTTTAACGTTAGA
    ATTGGTTGGTTAATTTTACGAATATTAGCAGTTGTTTTTGCATGGATGACATTTTTACGA
    ATTGGTTCAAAGGTTATTTACTCAGATGAAACGGGTGGATTATTGTTCTCAAGTTTATTG
    CCAACATTAGTGGCAGTATTCTTATTTGCAGCTCTATTTTTACCGCTATTAATGGAATAC
    GGTTTGTTAGAGATGTTGGGTCCTATTTTTAGACCGGTTATGAGACCTTTATTTACATTG
    CCAGGACGTTCGACGGTAGATAATTTAGCATCATTTATTGGAGACGGAACTGTTGGTGTC
    TTAATTACAAGTAGACAATATGGTGAAGGATATTATTCTCGTCGTGAGGCAACAGTTATT
    TCAACGACATTTAGTGTAGTTTCTATCACCTTTGCAATTGTAGTTGCTGAAACAGTGCAC
    ATGCAAAATCAATTTTTTGCTTTCTATTTATCAGTGATAGTATCCTGCCTCGTTGCAGCA
    GTCATTATGCCAAGAATTTGGCCTTTAAATAAAATTCCTGATGAGTATGCTAAGGAGGTA
    CCTGAAAGTGCGCGTACTGAGGCATTGCCAGAAGGAAAGACGGCATTGAGACATGGCTTT
    GATACTGCAACAGAAGTAGGTATTAAAGCACCGGGCGTTATTGACTTTTTTAAGTCAGGA
    TTAAAAACAGTCATTGATATGTGGTTTGTTATTTTGCCTGTAGTAATGAGTATTGGTACT
    ATTGCTACCATTATTGCGAACTACACGCCCTTTTTTGTCATATTGGGTAAACCTTTTGTT
    CCATTTTTAGAGTTAATGCAAATACCTGAAGCGGCACAGGCTTCTCAAACGATTATTATC
    GGTTTTGCCGATATGTTTTTACCTTCTATATTAATTGAAGGTGTACAAAATGATATAACT
    CGTTTTGTTATTGGGGCACTTAGTATATCGCAGTTAATATACTTGTCTGAAGTAGGTGGC
    GTCATACTTGGTTCGAAGATTCCTGTAAGCATCGGCAAATTGTTTATGATTTTCTTGATT
    AGAACAATCATTACACTACCAATTATTTCTTTGATGGCACATCTTTTGTTATAA
    60
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    1194

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SACOL_RS11375 [old locus tag: SACOL2164 ]
  • symbol: SACOL_RS11375
  • description: membrane protein
  • length: 397
  • theoretical pI: 7.49777
  • theoretical MW: 43610
  • GRAVY: 0.875315

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    Cellular processesCellular processesSporulation and germinationsporulation integral membrane protein YlbJ (TIGR02871; HMM-score: 13.6)
  • TheSEED:
  • PFAM:
    no clan definedGate; Nucleoside recognition (PF07670; HMM-score: 33)
    T_cell_tran_alt; T-cell leukemia translocation-altered (PF15128; HMM-score: 16.2)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 9
  • LocateP:
  • SignalP: no predicted signal peptide
    • Ymax: 0.183
    • Ymax_pos: 25
    • Cmax: 0.14
    • Cmax_pos: 25
    • Smax: 0.317
    • Smax_pos: 1
    • Smean: 0.246
    • D: 0.208
  • predicted transmembrane helices (TMHMM): 9

Accession numbers[edit source | edit]

  • GI:
  • RefSeq: WP_011447051 NCBI
  • UniProt:

Protein sequence[edit source | edit]

  • MPFLIVTIITLSGIITLICSTILKDKLKPDGLMNNAFNVRIGWLILRILAVVFAWMTFLRIGSKVIYSDETGGLLFSSLLPTLVAVFLFAALFLPLLMEYGLLEMLGPIFRPVMRPLFTLPGRSTVDNLASFIGDGTVGVLITSRQYGEGYYSRREATVISTTFSVVSITFAIVVAETVHMQNQFFAFYLSVIVSCLVAAVIMPRIWPLNKIPDEYAKEVPESARTEALPEGKTALRHGFDTATEVGIKAPGVIDFFKSGLKTVIDMWFVILPVVMSIGTIATIIANYTPFFVILGKPFVPFLELMQIPEAAQASQTIIIGFADMFLPSILIEGVQNDITRFVIGALSISQLIYLSEVGGVILGSKIPVSIGKLFMIFLIRTIITLPIISLMAHLLL

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

  • SACOL_RS11375 no polycistronic organisation predicted

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]