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NCBI: 02-MAR-2017

Summary[edit source | edit]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS12110 [old locus tag: SACOL2302 ]
  • pan locus tag?: SAUPAN005788000
  • symbol: SACOL_RS12110
  • pan gene symbol?:
  • synonym:
  • product: transcriptional regulator

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SACOL_RS12110 [old locus tag: SACOL2302 ]
  • symbol: SACOL_RS12110
  • product: transcriptional regulator
  • replicon: chromosome
  • strand: -
  • coordinates: 2364682..2365605
  • length: 924
  • essential: unknown

Accession numbers[edit source | edit]

  • Location: NC_002951 (2364682..2365605) NCBI
  • MicrobesOnline:

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    ATGAGCCTACCGAAAAAAATATTTTTATGGGTATTCGGTATTTTAGTAATCTTAGCGATT
    GTAGCTGTTGTGTATGTAGCTGCTAAAATTTTTATTACTGGTAATAAGATACACAATCCG
    TTAGATCGCAATCATTCAGAATTAAGAGATAAAAAAGTGAGTTTAAACGATGGTGATCCA
    TTCACAATCGCTTTATTTGGTGTCGATTCAGATGCTGATCGTAAGAAAAAGGGTGGCGGA
    GAGCGTAGTGATAGTATTATGATTTTATCTATCAACCCTAAAACGAAGAAAACTGAAATA
    GTAAGTATACCGCGTGATACAAGAGCGGAAATTGTTGGCCGTGGTACTACTGAAAAAATT
    GCACATGCCTATGCATATGGTGGACCAAATATGGCTGTTAAATCACTTGAAAAATTAATG
    AATGTGCCAATTGATCATTATGCGACAATCGATATGGATGGTTTGCATAATATGATAGAT
    AGCATCGGCGGTGTTGATGTAGTAAGTAATGATACATTCACTGTTGATGGTGTTCGTTTT
    ACAAAAGGACAGCAGACACATGTAAATGGTGATCAAGCATTGAAGTTTATTAGAAGTCGT
    AAAGAAGAAGGTGCTGGTGGTGACTTTGGTCGACAACAACGTCAGCAAATTGTGCTTGAA
    GCGATGGCCAATAAGATTGCAAGCCCATCATCGATTACACATTTTAATAGTCTAATGAAT
    GAAATTCAAAATAATGTTAAAACAGATTTAACATTAGGTGATTTGAATACGATTAGAAGC
    AATTATAAAGATGCTAATGACACGATTAATAAACATCAATTGAGTGGTCAAGGCGGCATT
    CAAAGTGACGGATTGTACTACTTCATTCCTAGTGAGCAGTCAAAAGCTGAAAGTACTAAG
    TTATTAAAAGATAATCTAGAGTAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    924

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SACOL_RS12110 [old locus tag: SACOL2302 ]
  • symbol: SACOL_RS12110
  • description: transcriptional regulator
  • length: 307
  • theoretical pI: 8.71513
  • theoretical MW: 33804.2
  • GRAVY: -0.359935

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    Signal transductionRegulatory functionsOthercell envelope-related function transcriptional attenuator common domain (TIGR00350; HMM-score: 149.4)
  • TheSEED:
  • PFAM:
    no clan definedLytR_cpsA_psr; Cell envelope-related transcriptional attenuator domain (PF03816; HMM-score: 166.9)
    DUF3053; Protein of unknown function (DUF3053) (PF11254; HMM-score: 12.7)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 9.68
    • Cellwall Score: 0.17
    • Extracellular Score: 0.16
    • Internal Helix: 1
  • LocateP:
  • SignalP: no predicted signal peptide
    • Ymax: 0.251
    • Ymax_pos: 29
    • Cmax: 0.285
    • Cmax_pos: 29
    • Smax: 0.523
    • Smax_pos: 6
    • Smean: 0.311
    • D: 0.274
  • predicted transmembrane helices (TMHMM): 1

Accession numbers[edit source | edit]

  • GI:
  • RefSeq: WP_001792529 NCBI
  • UniProt:

Protein sequence[edit source | edit]

  • MSLPKKIFLWVFGILVILAIVAVVYVAAKIFITGNKIHNPLDRNHSELRDKKVSLNDGDPFTIALFGVDSDADRKKKGGGERSDSIMILSINPKTKKTEIVSIPRDTRAEIVGRGTTEKIAHAYAYGGPNMAVKSLEKLMNVPIDHYATIDMDGLHNMIDSIGGVDVVSNDTFTVDGVRFTKGQQTHVNGDQALKFIRSRKEEGAGGDFGRQQRQQIVLEAMANKIASPSSITHFNSLMNEIQNNVKTDLTLGDLNTIRSNYKDANDTINKHQLSGQGGIQSDGLYYFIPSEQSKAESTKLLKDNLE

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

  • SACOL_RS12110 no polycistronic organisation predicted

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]