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NCBI: 02-MAR-2017

Summary[edit source | edit]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS12170 [old locus tag: SACOL2314 ]
  • pan locus tag?: SAUPAN005801000
  • symbol: SACOL_RS12170
  • pan gene symbol?:
  • synonym:
  • product: sodium transporter

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SACOL_RS12170 [old locus tag: SACOL2314 ]
  • symbol: SACOL_RS12170
  • product: sodium transporter
  • replicon: chromosome
  • strand: -
  • coordinates: 2374307..2375224
  • length: 918
  • essential: unknown

Accession numbers[edit source | edit]

  • Location: NC_002951 (2374307..2375224) NCBI
  • MicrobesOnline:

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    ATGTTTCAAAAATTGAGTATATTTGCCACGAAGAGTTTTTTGGTATGGATGTTAGTAGCA
    GCTGTTATTGGATTTATTTTCCCACAACATGTTGCGACATTAGGTAAATGGGTACCTTAT
    TTACTTGGTATTGTTATGTTAGGTATGGGATTAACAATTACACCTAATGATTTCAAAATG
    GTCTTTAAAGCACCTAGAGCAGTAATTATTGGTGTCTGTCTACAATTCAGTATTATGCCC
    ACATTAGCATTTATAATTGCAAAGTCTTTTCATTTACCACCTGATATTGCTGTTGGCGTA
    ATATTAGTTGGATGTTGTCCGGGTGGGACATCAAGTAATGTAATGAGTTATTTAGCCAAA
    GCTAACGTAGCACTTTCTGTTTCTATTACGACGGTCTCTACGTTGCTAGCGCCATTCGTT
    ACACCTGCGTTAATATATCTATTTGCAAATGAATGGTTGGAAGTATCTTTCGTGAGTATG
    TTGTGGTCAGTTGTTCAAGTTGTATTAATTCCAATTGCTTTAGGTATTGTTTTGCAAATT
    ATTAATCGTAAAATTGCTGAAAAAGCTTCTACAGCTTTGCCAATTATATCAGTTGTTGCT
    ATTTCATTAATTTTAGCAATAGTTGTAGGTGGCAGTAAGCACCAAATCTTAACTACAGGA
    TTATTAATATTTTTAGTAGTTATTTTACATAACGTATTAGGGTATACGATTGGATATTGG
    TTAGCTCGTCTTTTAAAATTAGATCGACAAGATCAAAAAGCAGTCAGTATTGAAGTTGGA
    ATGCAGAACTCTGGTTTAGCTGTGTCATTAGCAGCATTGCATTTTAATCCAATTGCAGCA
    GTACCAGGCGCAGTGTTTAGTTTCATTCATAATATAACAGGGCCTATTTTAGCAAAGTAT
    TGGTCAAAAAAGTTATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    918

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SACOL_RS12170 [old locus tag: SACOL2314 ]
  • symbol: SACOL_RS12170
  • description: sodium transporter
  • length: 305
  • theoretical pI: 10.2753
  • theoretical MW: 32851.6
  • GRAVY: 1.06951

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    MetabolismTransport and binding proteinsCarbohydrates, organic alcohols, and acidsbile acid transporter (TIGR00841; HMM-score: 289)
    membrane protein AbrB duplication (TIGR03082; HMM-score: 11.3)
  • TheSEED:
  • PFAM:
    CPA_AT (CL0064) SBF; Sodium Bile acid symporter family (PF01758; HMM-score: 155.2)
    SBF_like; SBF-like CPA transporter family (DUF4137) (PF13593; HMM-score: 77.2)
    Mem_trans; Membrane transport protein (PF03547; HMM-score: 10.4)
    no clan definedDUF3464; Protein of unknown function (DUF3464) (PF11947; HMM-score: 6.3)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 8
  • LocateP:
  • SignalP: no predicted signal peptide
    • Ymax: 0.24
    • Ymax_pos: 15
    • Cmax: 0.152
    • Cmax_pos: 32
    • Smax: 0.677
    • Smax_pos: 6
    • Smean: 0.557
    • D: 0.363
  • predicted transmembrane helices (TMHMM): 9

Accession numbers[edit source | edit]

  • GI: 446408961 NCBI
  • RefSeq: WP_000486816 NCBI
  • UniProt:

Protein sequence[edit source | edit]

  • MFQKLSIFATKSFLVWMLVAAVIGFIFPQHVATLGKWVPYLLGIVMLGMGLTITPNDFKMVFKAPRAVIIGVCLQFSIMPTLAFIIAKSFHLPPDIAVGVILVGCCPGGTSSNVMSYLAKANVALSVSITTVSTLLAPFVTPALIYLFANEWLEVSFVSMLWSVVQVVLIPIALGIVLQIINRKIAEKASTALPIISVVAISLILAIVVGGSKHQILTTGLLIFLVVILHNVLGYTIGYWLARLLKLDRQDQKAVSIEVGMQNSGLAVSLAALHFNPIAAVPGAVFSFIHNITGPILAKYWSKKL

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

  • SACOL_RS12170 no polycistronic organisation predicted

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]