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NCBI: 02-MAR-2017

Summary[edit source | edit]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS12315 [old locus tag: SACOL2345 ]
  • pan locus tag?: SAUPAN005849000
  • symbol: SACOL_RS12315
  • pan gene symbol?:
  • synonym:
  • product: alpha/beta hydrolase

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SACOL_RS12315 [old locus tag: SACOL2345 ]
  • symbol: SACOL_RS12315
  • product: alpha/beta hydrolase
  • replicon: chromosome
  • strand: -
  • coordinates: 2404174..2405094
  • length: 921
  • essential: unknown

Accession numbers[edit source | edit]

  • Location: NC_002951 (2404174..2405094) NCBI
  • MicrobesOnline:

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    TTGATTAGAAACCGTGTTATGAATAGCGTTGTCAATAAATATTTGCTTCACAATCGCTCG
    ATTATGTTTAAAAATGATCAAGATGTTGAAAGATTTTTTTATAAAAGAGAAATTGAAAAT
    AGAAAAAAACATAAGCAGCCTTCAACATTAAATGTTAAAGCAAATTTAGAAAAATTGTCA
    TTAGATGATATGCAAGTCTTTCGCTTTAATTTCAGACATCAAATTGATAAGAAAATTTTA
    TATATTCACGGTGGATTCAATGCACTACAACCATCACCGTTCCATTGGAGATTGTTGGAT
    AAAATCACTTTAAGTACATTATATGAGGTTGTACTGCCTATCTATCCAAAGACACCAGAG
    TTTCATATTGACGATACTTTCCAAGCGATACAACGTGTTTATGATCAATTAGTATCTGAA
    GTAGGACATCAAAATGTCGTAGTCATGGGTGATGGTTCAGGTGGTGCACTGGCATTATCC
    TTTGTACAATCTCTTTTAGATAATCAACAGCCATTACCGAATAAATTGTATTTAATCTCA
    CCAATTTTAGATGCAACACTATCTAATAAAGATATTTCGGACGCCTTAATCGAACAAGAT
    GCGGTTCTAAGTCAGTTTGGTGTCAATGAGATTATGAAAAAATGGGCGAATGGCCTACCA
    TTAACAGATAAGCGCATATCGCCAATTAATGGCACAATAGAAGGATTGCCACCAGTTTAT
    ATGTTTGGTGGTGGACGTGAAATGACACATCCTGATATGAAGCTATTTGAACAAATGATG
    TTGCAACATCATCAATACATTGAGTTTTATGATTATCCTAAGATGGTACATGATTTTCCA
    ATTTATCCAATTAGACAATCACATAAAGCTATTAAACAAATTGCCAAATCGATAGATGAG
    GATGTAACACAAAATAACTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    921

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SACOL_RS12315 [old locus tag: SACOL2345 ]
  • symbol: SACOL_RS12315
  • description: alpha/beta hydrolase
  • length: 306
  • theoretical pI: 8.02735
  • theoretical MW: 35544.7
  • GRAVY: -0.389216

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
  • TheSEED:
  • PFAM:
    AB_hydrolase (CL0028) Abhydrolase_3; alpha/beta hydrolase fold (PF07859; HMM-score: 97.9)
    Say1_Mug180; Steryl acetyl hydrolase (PF10340; HMM-score: 55.6)
    Hydrolase_4; Serine aminopeptidase, S33 (PF12146; HMM-score: 14.4)
    DUF3530; Protein of unknown function (DUF3530) (PF12048; HMM-score: 14.1)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • Ymax: 0.187
    • Ymax_pos: 14
    • Cmax: 0.108
    • Cmax_pos: 25
    • Smax: 0.467
    • Smax_pos: 6
    • Smean: 0.349
    • D: 0.25
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

  • GI: 446543518 NCBI
  • RefSeq: WP_000620864 NCBI
  • UniProt:

Protein sequence[edit source | edit]

  • MIRNRVMNSVVNKYLLHNRSIMFKNDQDVERFFYKREIENRKKHKQPSTLNVKANLEKLSLDDMQVFRFNFRHQIDKKILYIHGGFNALQPSPFHWRLLDKITLSTLYEVVLPIYPKTPEFHIDDTFQAIQRVYDQLVSEVGHQNVVVMGDGSGGALALSFVQSLLDNQQPLPNKLYLISPILDATLSNKDISDALIEQDAVLSQFGVNEIMKKWANGLPLTDKRISPINGTIEGLPPVYMFGGGREMTHPDMKLFEQMMLQHHQYIEFYDYPKMVHDFPIYPIRQSHKAIKQIAKSIDEDVTQNN

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

  • SACOL_RS12315 no polycistronic organisation predicted

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]