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NCBI: 02-MAR-2017

Summary[edit source | edit]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS12460 [old locus tag: SACOL2373 ]
  • pan locus tag?: SAUPAN005894000
  • symbol: SACOL_RS12460
  • pan gene symbol?:
  • synonym:
  • product: phage infection protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SACOL_RS12460 [old locus tag: SACOL2373 ]
  • symbol: SACOL_RS12460
  • product: phage infection protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2431127..2432404
  • length: 1278
  • essential: unknown

Accession numbers[edit source | edit]

  • Location: NC_002951 (2431127..2432404) NCBI
  • MicrobesOnline:

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    ATGAATATATTTAAAAATAAATTATTATGGATTGCACCAATAGCAACTATGATTATCTTG
    GTAATCTTTTCTTTAGCTTTTTATCCTGCATATAATCCTAAACCAAAAGATTTACCAATT
    GGTATATTAAACGAGGATAAAGGTACAACGATTCAAGATAAAAATGTTAACATTGGTAAA
    AAATTAGAGGATAAATTATTAGATAGTGATTCTAATAAAATTAAATGGGTTAAGGTTGAT
    AGTGAAAAAGACCTTGAAAAAGATTTGAAAGATCAAAAAATCTTTGGAGTAGCTATTATT
    GATAAAGACTTTTCAAAAGATGCTATGAGTAAAACACAAAAAGTAGTTATGGATAGTAAA
    AAAGAAGAAATGCAACAAAAAGTTGCTTCAGGTGAAATTCCGCCACAAGTGGTTCAACAA
    ATGAAACAAAAAATGGGGAATCAACAAGTAGAGGTTAAGCAGGCTAAATTTAAAACGATT
    GTAAGTGAAGGATCAAGCTTACAAGGTTCACAAATTGCATCAGCTGTGTTAACTGGTATG
    GGTGATAATATTAATGCTCAAATTACGAAGCAAAGTTTGGAAACATTAACGAGTCAAAAT
    GTTAAAGTCAATGCCGCGGACATCAATGGTTTGACGAATCCAGTAAAAGTGGATAATGAA
    AAACTTAATAAAGTTAAAGATCACCAAGCAGGTGGTAATGCACCATTCCTAATGTTTATG
    CCAATTTGGATAGGTTCAATCGTAACGTCTATCTTATTGTTCTTTGCATTTAGAACTAGT
    AACAATATCGTCGTGCAACATCGTATCATTGCTTCAATTGGACAGATGATATTTGCAGTT
    GTTGCAGCATTTGCAGGTAGCTTTGTTTATATTTATTTCATGCAAGGCGTTCAAAGATTT
    GATTTTGACCATCCAAATCGTATCGCAATTTTTGTAGCATTTGCGATTCTTGGTTTCGTG
    GGCCTTATTTTAGGTGTTATGGTATGGCTAGGTATGAAGTCAGTTCCAATTTTCTTCATT
    TTAATGTTCTTTAGTATGCAACTTGTAACGTTACCTAAACAAATGTTGCCTGAAAGTTAT
    CAAAAATATGTATATGATTGGAATCCATTCACACACTATGCAACAAGTGTAAGAGAACTA
    TTATACTTGAATCATCATATTGAATTAAATAGTACAATGTGGATGTTTATAGGGTTTATG
    ATTTTTGGCGCTGTATCAAGTTTAGTTTCAGCTATTGTTAGAAAACATAGCACAAAACGT
    ACTGAAGTGCCGTCATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1278

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SACOL_RS12460 [old locus tag: SACOL2373 ]
  • symbol: SACOL_RS12460
  • description: phage infection protein
  • length: 425
  • theoretical pI: 9.98074
  • theoretical MW: 47826.8
  • GRAVY: 0.0976471

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    YhgE/Pip N-terminal domain (TIGR03061; HMM-score: 71.6)
    YhgE/Pip C-terminal domain (TIGR03062; HMM-score: 53.6)
    type VII secretion protein EsaA (TIGR03929; HMM-score: 25.3)
    Genetic information processingProtein synthesistRNA and rRNA base modificationtRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain (TIGR03197; HMM-score: 17.7)
    ferredoxin-type protein, NapH/MauN family (TIGR02163; HMM-score: 12.8)
  • TheSEED:
  • PFAM:
    ABC-2 (CL0181) ABC2_membrane_3; ABC-2 family transporter protein (PF12698; HMM-score: 89)
    NADP_Rossmann (CL0063) Methyltransf_18; Methyltransferase domain (PF12847; HMM-score: 14.9)
    no clan definedDUF1598; Protein of unknown function (DUF1598) (PF07643; HMM-score: 14.9)
    Tetraspannin (CL0347) CD20; CD20-like family (PF04103; HMM-score: 6.2)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 6
  • LocateP:
  • SignalP: no predicted signal peptide
    • Ymax: 0.186
    • Ymax_pos: 11
    • Cmax: 0.145
    • Cmax_pos: 36
    • Smax: 0.472
    • Smax_pos: 8
    • Smean: 0.355
    • D: 0.252
  • predicted transmembrane helices (TMHMM): 6

Accession numbers[edit source | edit]

  • GI: 446942767 NCBI
  • RefSeq: WP_001020023 NCBI
  • UniProt:

Protein sequence[edit source | edit]

  • MNIFKNKLLWIAPIATMIILVIFSLAFYPAYNPKPKDLPIGILNEDKGTTIQDKNVNIGKKLEDKLLDSDSNKIKWVKVDSEKDLEKDLKDQKIFGVAIIDKDFSKDAMSKTQKVVMDSKKEEMQQKVASGEIPPQVVQQMKQKMGNQQVEVKQAKFKTIVSEGSSLQGSQIASAVLTGMGDNINAQITKQSLETLTSQNVKVNAADINGLTNPVKVDNEKLNKVKDHQAGGNAPFLMFMPIWIGSIVTSILLFFAFRTSNNIVVQHRIIASIGQMIFAVVAAFAGSFVYIYFMQGVQRFDFDHPNRIAIFVAFAILGFVGLILGVMVWLGMKSVPIFFILMFFSMQLVTLPKQMLPESYQKYVYDWNPFTHYATSVRELLYLNHHIELNSTMWMFIGFMIFGAVSSLVSAIVRKHSTKRTEVPS

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

  • SACOL_RS12460 no polycistronic organisation predicted

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]