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NCBI: 02-MAR-2017

Summary[edit source | edit]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS13330 [old locus tag: SACOL2546 ]
  • pan locus tag?: SAUPAN006185000
  • symbol: SACOL_RS13330
  • pan gene symbol?:
  • synonym:
  • product: transcriptional regulator

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SACOL_RS13330 [old locus tag: SACOL2546 ]
  • symbol: SACOL_RS13330
  • product: transcriptional regulator
  • replicon: chromosome
  • strand: -
  • coordinates: 2603696..2604691
  • length: 996
  • essential: unknown

Accession numbers[edit source | edit]

  • Location: NC_002951 (2603696..2604691) NCBI
  • MicrobesOnline:

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    ATGACGCTATTTTTAAAGTATGCACCGTACGGTAAACAAGGACTACAAGCATTATCCGGT
    GCAGCTTGTGCGACATTTCTACCACAAGCATTCTTAAGTTATGCTATTGGTGGCGTATTT
    GATATTAAATTTCTACAAGATATTGGGGATTTAGCAGGAAGTTTAAGCGGTATCGCAGTA
    GGTATTCTAACGTGCTTAAACTTAGGCGTTGCACCAGTATTTGCGGTCATTGTTGGTTTA
    GTATTACATGACTTTAAATTATTACCAGCATTCATCGCAGCTTATGGCGTAGCTTTTTTA
    ATTAAATGGATTGAAAAGAAAGTTCCAGAAGGCTTGGACTTAATTGTGGTGATCTTATTT
    GCACCAGCAATTGCTTTCGGACTTGCATCAATCATTACACCTGGTGTGCTAGCAACATTA
    AAACAAATAGGTAGTGCTGTCACTGCGGTAGGTGATAACAATCCATATGCATTAGCGGTC
    ATTTTAGGACTAGTGATTCCTGTTACAGGTATGACACCGCTAAGTTCAATGGTATTAACA
    AGTTTATTAGGACTGACAGGTGTTCCTATGGCTATTGGAGCACTAACATGTACAGGTAGC
    TCATTTGTTAACCTTATTTTATTCCGAAAATTAAACATTGGTGGACCGTCAAAAGCATTT
    GCAGTTTGTATTGAGCCATTGACGCAAATTGATTTAATAGCGCAATATCCAGTACAACTA
    TATGGTACAAATGCACTGATTGGGGTCGTCAACGCATGTATCGTGACATTTAGCGGACTA
    GTAATAGGTGTCAAAGGTATGGCAACACCAATTGCAGGCGCCATCGTATTGTTTGGCTTT
    AATAATGCAGTGACATCAATTGTAACAATCGCAACAGTGATTATTGTCAGCATTGTCTTA
    GCCTATATTATTGGAACACTAATTAATAAGTTTAATTTAATGAATATCAACTTTAAAATG
    CCGAGCAAAAAGAATCATATTAAGGAGAGTGTTTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    996

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SACOL_RS13330 [old locus tag: SACOL2546 ]
  • symbol: SACOL_RS13330
  • description: transcriptional regulator
  • length: 331
  • theoretical pI: 9.14588
  • theoretical MW: 34384.1
  • GRAVY: 1.08792

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    PTS system, sucrose-specific IIBC component (TIGR01996; EC 2.7.1.69; HMM-score: 16.5)
    PTS system, trehalose-specific IIBC component (TIGR01992; EC 2.7.1.69; HMM-score: 5.7)
  • TheSEED:
  • PFAM:
    PTS_EIIC (CL0493) PTS_EIIC_2; Phosphotransferase system, EIIC (PF13303; HMM-score: 142.3)
    PTS_EIIC; Phosphotransferase system, EIIC (PF02378; HMM-score: 20.1)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 8
  • LocateP:
  • SignalP: no predicted signal peptide
    • Ymax: 0.222
    • Ymax_pos: 18
    • Cmax: 0.168
    • Cmax_pos: 36
    • Smax: 0.394
    • Smax_pos: 13
    • Smean: 0.277
    • D: 0.243
  • predicted transmembrane helices (TMHMM): 8

Accession numbers[edit source | edit]

  • GI:
  • RefSeq: WP_001827191 NCBI
  • UniProt:

Protein sequence[edit source | edit]

  • MTLFLKYAPYGKQGLQALSGAACATFLPQAFLSYAIGGVFDIKFLQDIGDLAGSLSGIAVGILTCLNLGVAPVFAVIVGLVLHDFKLLPAFIAAYGVAFLIKWIEKKVPEGLDLIVVILFAPAIAFGLASIITPGVLATLKQIGSAVTAVGDNNPYALAVILGLVIPVTGMTPLSSMVLTSLLGLTGVPMAIGALTCTGSSFVNLILFRKLNIGGPSKAFAVCIEPLTQIDLIAQYPVQLYGTNALIGVVNACIVTFSGLVIGVKGMATPIAGAIVLFGFNNAVTSIVTIATVIIVSIVLAYIIGTLINKFNLMNINFKMPSKKNHIKESV

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

  • SACOL_RS13330 no polycistronic organisation predicted

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]