From AureoWiki
Jump to navigation Jump to search

NCBI: 03-AUG-2016

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus NCTC8325
  • locus tag: SAOUHSC_00328
  • pan locus tag?: SAUPAN001888000
  • symbol: SAOUHSC_00328
  • pan gene symbol?: tatC
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SAOUHSC_00328
  • symbol: SAOUHSC_00328
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 341746..342402
  • length: 657
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    TTGTCGTTCGTCATTACGGTCATCGTCGTATATGTTTCATCATTTTGGTGGATGACACCA
    TTCATAACGTATATTACCCGTGCACATGTGTCCTTACATGCATTTTCATTCACAGAAATG
    ATACAAATATACGTGATGATTATATTTTTCATCGCGTTTTGTTTCATTTCACCAGTCATG
    TTTTATCAATTGTGGGCATTCATTGCACCTGGATTACATAATAATGAACGTCAATTTATT
    TATAAATATAGTTTTTTCAGCGTGTTATTATTCTGTGCTGGCGTCGCTTTTGCATTTTAT
    GTTGGCTTTCCAATGATCATTCAATTCGCGTTAAAATTATCATTAACTTTAAACATTTCG
    CCTGTCATTGGCTTTAAAGCATATTTGATTGAACTCATACGTTGGTTATTCACATTTGGT
    CTTCTATTTCAATTACCAATATTATTTATGGGTCTTGCAAAATTCGGTCTTATAGATACC
    ACATCATTGAAACATTATCGTAAATATATTTATTTCGCTTGCTTTGTATTAGCAAGTATC
    ATTGCACCACCCGATTTAACATTAAATATATTACTCACATTGCCACTCATATTGCTCTTT
    GAGTTCAGTATGTTCATCGTTAAGTTCACATGCCGAGGCAAACCGCCAACACATTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    657

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SAOUHSC_00328
  • symbol: SAOUHSC_00328
  • description: hypothetical protein
  • length: 218
  • theoretical pI: 9.48042
  • theoretical MW: 25382.6
  • GRAVY: 1.09633

⊟Function[edit | edit source]

  • TIGRFAM:
    Genetic information processing Protein fate Protein and peptide secretion and trafficking twin arginine-targeting protein translocase TatC (TIGR00945; HMM-score: 148.9)
    Sec-independent protein translocase TatC (TIGR01912; HMM-score: 120)
  • TheSEED  :
    • Twin-arginine translocation protein TatC
    Membrane Transport Protein translocation across cytoplasmic membrane Twin-arginine translocation system  Twin-arginine translocation protein TatC
  • PFAM:
    no clan defined TatC; Sec-independent protein translocase protein (TatC) (PF00902; HMM-score: 138)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 7
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.004316
    • TAT(Tat/SPI): 0.000272
    • LIPO(Sec/SPII): 0.043409
  • predicted transmembrane helices (TMHMM): 6

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MSFVITVIVVYVSSFWWMTPFITYITRAHVSLHAFSFTEMIQIYVMIIFFIAFCFISPVMFYQLWAFIAPGLHNNERQFIYKYSFFSVLLFCAGVAFAFYVGFPMIIQFALKLSLTLNISPVIGFKAYLIELIRWLFTFGLLFQLPILFMGLAKFGLIDTTSLKHYRKYIYFACFVLASIIAPPDLTLNILLTLPLILLFEFSMFIVKFTCRGKPPTH

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator: Fur* (repression) regulon
    Fur*(TF)important in Iron homeostasis; RegPrecise    transcription unit transferred from N315 data RegPrecise 

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

  1. ↑ 1.0 1.1 1.2 Ulrike Mäder, Pierre Nicolas, Maren Depke, Jan Pané-Farré, Michel Debarbouille, Magdalena M van der Kooi-Pol, Cyprien Guérin, Sandra Dérozier, Aurelia Hiron, Hanne Jarmer, Aurélie Leduc, Stephan Michalik, Ewoud Reilman, Marc Schaffer, Frank Schmidt, Philippe Bessières, Philippe Noirot, Michael Hecker, Tarek Msadek, Uwe Völker, Jan Maarten van Dijl
    Staphylococcus aureus Transcriptome Architecture: From Laboratory to Infection-Mimicking Conditions.
    PLoS Genet: 2016, 12(4);e1005962
    [PubMed:27035918] [WorldCat.org] [DOI] (I e)

⊟Relevant publications[edit | edit source]

Retrieved from "http://aureowiki.med.uni-greifswald.de/index.php?title=SAOUHSC_00328&oldid=99902"