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NCBI: 03-AUG-2016

Summary[edit source | edit]

  • organism: Staphylococcus aureus NCTC8325
  • locus tag: SAOUHSC_00625
  • pan locus tag?: SAUPAN002493000
  • symbol: SAOUHSC_00625
  • pan gene symbol?: mnhA2
  • synonym:
  • product: monovalent cation/H+ antiporter subunit A

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SAOUHSC_00625
  • symbol: SAOUHSC_00625
  • product: monovalent cation/H+ antiporter subunit A
  • replicon: chromosome
  • strand: +
  • coordinates: 614929..617331
  • length: 2403
  • essential: no [1] DEG other strains

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    1861
    1921
    1981
    2041
    2101
    2161
    2221
    2281
    2341
    2401
    ATGAGTTTGGTTTATTTATTAATTGCTATACTTGTGATTATGGCGATGATACTTCTAATG
    TCTAAACGTAGAGCATTGGCTAAATATGCCGGGTACATAGCGTTGGTTGCACCTGTAATT
    TCATCTATCTATTTTTTGATTCAAATACCATCAGTAGCTAAACTGCAATATCTTTCTACC
    TCTATTCCATGGATTAAGACATTAGATATTAATTTAGATTTACGTTTAGATGGTTTAAGT
    TTAATGTTTTCTCTTATTATTTCACTTATTGGAATTGCAGTATTCTTCTATGCAACTCAA
    TATTTATCCTCTCGAAAAGACAATTTACCAAGGTTTTATTTTTATTTAACGTTATTTATG
    TTCAGTATGATTGGTATTGTATTATCAGACAATACGATATTGATGTACATTTTTTGGGAA
    TTAACGAGTGTATCATCATTTTTATTGATTTCATATTGGTATAACAATGGTGACAGTCAA
    TTTGGTGCGATTCAATCATTTATGATTACAGTATTTGGTGGATTGGCGTTATTAGTTGGT
    TTTATTATGCTGTATATCATGACAGGAACGAATAACATCACAGAGATATTAGGACAAGCA
    GATCATATTAAGAATCATGGATTGTTTATCCCTATGATTTTTATGTTTTTATTAGGTGCA
    TTTACAAAATCAGCACAATTTCCATTTCATATTTGGCTACCTAGAGCAATGGCTGCACCT
    ACACCTGTAAGTGCTTATTTACATTCAGCCACGATGGTAAAAGCTGGTATCTTTTTATTA
    CTTCGATTTACACCATTATTAGGTCTTAGCAATATGTACGTATATATCGTTACGTTTGTT
    GGTTTAATAACAATGTTATTTGGTTCAATTACAGCTTTAAAACAATGGGATTTAAAAGGT
    ATCCTAGCGTACTCTACAATCAGTCAACTTGGGATGATTATGGCTATGGTGGGTATAGGT
    GGCGGATATGCTCAACACCAACAAGACGCAATAGCATCTATTTATGTATTTGTATTATTT
    GGTGCGCTATTTCATCTAATGAATCATGCCATCTTTAAATGTGCGCTTTTCATGGGAGTA
    GGTATTTTAGATCATGAAGCAGGTTCAAGGGATATACGAATTTTAAGTGGAATGCGTCAA
    CTATTTCCTAAAATGAATCTAGTCATGACGATAGCGGCTCTATCTATGGCTGGAGTACCA
    TTTTTAAATGGATTTTTAAGTAAAGAAATGTTTTTAGATGCATTAACACAAACTGGACAA
    TTATCCCAATTTAGTTTGATTTCAATGATAGCTATCGTGTTTGTTGGTGTTATTGCGAGT
    GTTTTTACATTCACATATGCACTATACATGGTAAAAGAAGTATTTTGGACAAAATATGAT
    TCTAAGGTTTTTACTAAAAAAAATATCCACGAACCATGGTTGTTTAGTTTACCATCTCTT
    ATATTAATGGTGCTAGTACCTGTAATCTTTTTTGTACCAAATATATTTGGGAAGGGGATT
    ATCGTTCTAGCATTAAGAGCTGTATCAGGTGGTAATCATCAAATTGATCAATTGGCACCA
    CATGTTTCGCAATGGCATGGATTTAACATACCGCTTCTTTTAACCATCATCATTATTTTA
    TTGGGTAGTGTACTAGCAATCAAAGTAGATTGGAAAAAAGTGTTCACAGGTAAAATTAGA
    CAGATTTCAGTTTCAAAAAGCTATGAGATGGTATATCGACATTTTGAAAAGTTTGCTACG
    AAGCGATTTAAACGTGTTATGCAAGATCGTTTAAACCAATACATTATTATGACCTTAGGC
    ATATTTATGATTATCATTGGATATGGTTATATTCGAATTGGACTTCCTAAAGTACATCAG
    TTACATGTTTCTGAATTTGGGGCATTAGAAATTATATTAGCAATCGTAACTGTCACAATT
    GGTATTTCTTTAATTTTTATACGTCAACGACTGACAATGGTCATTTTAAATGGAGTCATC
    GGATTTGTTGTGACCTTATTCTTTATAGCAATGAAAGCCCCTGATCTAGCATTGACTCAG
    CTAGTAGTTGAAACAATAACGACGATACTATTTATTGTCAGTTTTTCAAGATTACCAAAC
    GTGCCAAGATCTAACGCTAACAAAAAAAGAGAAATAATTAAAATTTCTGTATCACTCTTG
    ATGGCACTTATTGTTGTATCATTAATTTTTATTACACAACAAACAGATGGTTTATCATCA
    ATATCAGACTTTTATTTAAAAGCTGACAAACTAACAGGTGGTAAAAATATTGTAAATGCG
    ATACTTGGTGACTTTAGAGCATTAGATACATTATTTGAAGGATTAGTGTTAATTATTACT
    GGGCTAGGTATTTACACATTATTAAATTATCAAGATCGGAGGGGACAAGATGAAAGAGAA
    TGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1680
    1740
    1800
    1860
    1920
    1980
    2040
    2100
    2160
    2220
    2280
    2340
    2400
    2403

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SAOUHSC_00625
  • symbol: SAOUHSC_00625
  • description: monovalent cation/H+ antiporter subunit A
  • length: 800
  • theoretical pI: 10.0697
  • theoretical MW: 89686
  • GRAVY: 0.795125

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    MetabolismTransport and binding proteinsCations and iron carrying compoundsmonovalent cation:proton antiporter (TIGR00940; HMM-score: 738.8)
    MetabolismEnergy metabolismElectron transportproton-translocating NADH-quinone oxidoreductase, chain L (TIGR01974; EC 1.6.-.-; HMM-score: 314.6)
    MetabolismEnergy metabolismElectron transportproton-translocating NADH-quinone oxidoreductase, chain M (TIGR01972; HMM-score: 181.7)
    MetabolismEnergy metabolismElectron transportproton-translocating NADH-quinone oxidoreductase, chain N (TIGR01770; HMM-score: 146.1)
    NAD(P)H dehydrogenase, subunit NdhF3 family (TIGR01960; HMM-score: 141.2)
    MetabolismTransport and binding proteinsCations and iron carrying compoundsmulticomponent K+:H+antiporter (TIGR00944; HMM-score: 104.7)
  • TheSEED:  
    Membrane TransportUni- Sym- and AntiportersSodium Hydrogen Antiporter Na(+) H(+) antiporter subunit A (TC 2.A.63.1.3) 
  • PFAM:
    ComplexI-N (CL0425) Proton_antipo_M; Proton-conducting membrane transporter (PF00361; HMM-score: 223.5)
    no clan definedDUF4040; Domain of unknown function (DUF4040) (PF13244; HMM-score: 67.6)
    Proton_antipo_N; NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus (PF00662; HMM-score: 41.3)
    TspO_MBR; TspO/MBR family (PF03073; HMM-score: 17.7)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 21
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular Possibility: 0.17
    • Signal Peptide Possibility: 0.5
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.267
    • Ymax_pos: 28
    • Cmax: 0.312
    • Cmax_pos: 28
    • Smax: 0.302
    • Smax_pos: 2
    • Smean: 0.235
    • D: 0.254
  • predicted transmembrane helices (TMHMM): 21

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MSLVYLLIAILVIMAMILLMSKRRALAKYAGYIALVAPVISSIYFLIQIPSVAKLQYLSTSIPWIKTLDINLDLRLDGLSLMFSLIISLIGIAVFFYATQYLSSRKDNLPRFYFYLTLFMFSMIGIVLSDNTILMYIFWELTSVSSFLLISYWYNNGDSQFGAIQSFMITVFGGLALLVGFIMLYIMTGTNNITEILGQADHIKNHGLFIPMIFMFLLGAFTKSAQFPFHIWLPRAMAAPTPVSAYLHSATMVKAGIFLLLRFTPLLGLSNMYVYIVTFVGLITMLFGSITALKQWDLKGILAYSTISQLGMIMAMVGIGGGYAQHQQDAIASIYVFVLFGALFHLMNHAIFKCALFMGVGILDHEAGSRDIRILSGMRQLFPKMNLVMTIAALSMAGVPFLNGFLSKEMFLDALTQTGQLSQFSLISMIAIVFVGVIASVFTFTYALYMVKEVFWTKYDSKVFTKKNIHEPWLFSLPSLILMVLVPVIFFVPNIFGKGIIVLALRAVSGGNHQIDQLAPHVSQWHGFNIPLLLTIIIILLGSVLAIKVDWKKVFTGKIRQISVSKSYEMVYRHFEKFATKRFKRVMQDRLNQYIIMTLGIFMIIIGYGYIRIGLPKVHQLHVSEFGALEIILAIVTVTIGISLIFIRQRLTMVILNGVIGFVVTLFFIAMKAPDLALTQLVVETITTILFIVSFSRLPNVPRSNANKKREIIKISVSLLMALIVVSLIFITQQTDGLSSISDFYLKADKLTGGKNIVNAILGDFRALDTLFEGLVLIITGLGIYTLLNYQDRRGQDERE

Experimental data[edit source | edit]

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor: SAOUHSC_02298 (SigB*) [4] [5] other strains
    SigB* (sigma factor) controls a large regulon involved in stress/starvation response and adaptation
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

  1. Roy R Chaudhuri, Andrew G Allen, Paul J Owen, Gil Shalom, Karl Stone, Marcus Harrison, Timothy A Burgis, Michael Lockyer, Jorge Garcia-Lara, Simon J Foster, Stephen J Pleasance, Sarah E Peters, Duncan J Maskell, Ian G Charles
    Comprehensive identification of essential Staphylococcus aureus genes using Transposon-Mediated Differential Hybridisation (TMDH).
    BMC Genomics: 2009, 10;291
    [PubMed:19570206] [WorldCat.org] [DOI] (I e)
  2. Stephan Michalik, Maren Depke, Annette Murr, Manuela Gesell Salazar, Ulrike Kusebauch, Zhi Sun, Tanja C Meyer, Kristin Surmann, Henrike Pförtner, Petra Hildebrandt, Stefan Weiss, Laura Marcela Palma Medina, Melanie Gutjahr, Elke Hammer, Dörte Becher, Thomas Pribyl, Sven Hammerschmidt, Eric W Deutsch, Samuel L Bader, Michael Hecker, Robert L Moritz, Ulrike Mäder, Uwe Völker, Frank Schmidt
    A global Staphylococcus aureus proteome resource applied to the in vivo characterization of host-pathogen interactions.
    Sci Rep: 2017, 7(1);9718
    [PubMed:28887440] [WorldCat.org] [DOI] (I e)
  3. Maren Depke, Stephan Michalik, Alexander Rabe, Kristin Surmann, Lars Brinkmann, Nico Jehmlich, Jörg Bernhardt, Michael Hecker, Bernd Wollscheid, Zhi Sun, Robert L Moritz, Uwe Völker, Frank Schmidt
    A peptide resource for the analysis of Staphylococcus aureus in host-pathogen interaction studies.
    Proteomics: 2015, 15(21);3648-61
    [PubMed:26224020] [WorldCat.org] [DOI] (I p)
  4. Markus Bischoff, Paul Dunman, Jan Kormanec, Daphne Macapagal, Ellen Murphy, William Mounts, Brigitte Berger-Bächi, Steven Projan
    Microarray-based analysis of the Staphylococcus aureus sigmaB regulon.
    J. Bacteriol.: 2004, 186(13);4085-99
    [PubMed:15205410] [WorldCat.org] [DOI] (P p)
  5. 5.0 5.1 Ulrike Mäder, Pierre Nicolas, Maren Depke, Jan Pané-Farré, Michel Debarbouille, Magdalena M van der Kooi-Pol, Cyprien Guérin, Sandra Dérozier, Aurelia Hiron, Hanne Jarmer, Aurélie Leduc, Stephan Michalik, Ewoud Reilman, Marc Schaffer, Frank Schmidt, Philippe Bessières, Philippe Noirot, Michael Hecker, Tarek Msadek, Uwe Völker, Jan Maarten van Dijl
    Staphylococcus aureus Transcriptome Architecture: From Laboratory to Infection-Mimicking Conditions.
    PLoS Genet.: 2016, 12(4);e1005962
    [PubMed:27035918] [WorldCat.org] [DOI] (I e)

Relevant publications[edit source | edit]