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NCBI: 03-AUG-2016

Summary[edit source | edit]

  • organism: Staphylococcus aureus NCTC8325
  • locus tag: SAOUHSC_00997
  • pan locus tag?: SAUPAN003264000
  • symbol: SAOUHSC_00997
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SAOUHSC_00997
  • symbol: SAOUHSC_00997
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 969198..970415
  • length: 1218
  • essential: no DEG other strains

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    ATGAATAAATTTTTAAAATACTTTTTGATCCTTCTAGCATTGGTTCTCATTGTTGTTCCA
    ATAGTCTTCGCTACGTTACTTTTTAAAACGTCCCAAGATGCATTCGAATCTTCTCAAGAC
    AGCAAAAATGCTAATCGTCAATCCAACTTAAGAGATAATAAAGTCAATCCCGAAGAACAA
    CCTATCTCTATTCTTTTCTTAGGTATCGATGATAACGATGGAAGAAGAAAAAAAGGACAG
    GATGCTGAACACTCTAGATCAGACGCTATGATTTTAACTACTTTTAATCAATCAAAACAT
    CAAATTAGAATGCTTAGTATTCCACGTGATACTATCAGCTACATTCCTAAAGTTGGCTAT
    TACGATAAGATTACCCATGCACATGCATATGGTGGTCCAATTGCCGCAATGGATTCGGTA
    GAAGCTACCATGAATGTACCTGTTGATTATTATGTGAGAGTCAATATGAAAGCATTTGTC
    GAGGCTGTAAATGAGCTTGGTGGCATATACTATGATGTGCCATACGACTTAAATGAACCT
    AACACAGATGATACTGGTAAGATTAAAATTAAAAAAGGGTACCAAAAATTAAATGGTGAT
    GAGGCTTTAGCAGTTGCTAGAACTAGACATCATGATTCAGACTTAAAACGTGGACAACGT
    CAAATGGAATTAATTAAGATTTTATTCCAAAAAGCACAGGAAGTTGATTCTATTGATAAA
    CTTGATAACGTGATTCAAATTGTAGGTAAAAATGCAAAGCATAATTTAACTAACTCTGAA
    ATTAAAGCTTTAGCAAAAATGTACTTAACAAATGATGTTGAAATTAAAACTGCGCAATTA
    AAAGGTAAAGATGATATGTTAAATGGTATTTACTATTATCATCCAAGTGTTGAAAGCATT
    CAAAAATATGCAAACTTACTTCGTAAAGACTTAGAATTATCACCTATTAATGATAAAAAT
    GATTTCTTAGATCAACGTGTCATTAATCATTATGGTTCATTAATACCATTAACGCCTTTA
    GATAATAGTTTATTGAGAAAAGAACAAAATGATACGACAGATAAAGATAAGACATCTAAC
    GAGAACAGTGATTCAACTAATAACAGTGATTCCAGCAATCAACAACAACCTGCTACAGAT
    CAAAACTCAAATCAAAATCAAGGTGGCACACAACAAGCGCCACAAGCTTCAAATAACCAA
    AATGGTGTTGTAAATTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1218

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SAOUHSC_00997
  • symbol: SAOUHSC_00997
  • description: hypothetical protein
  • length: 405
  • theoretical pI: 6.43652
  • theoretical MW: 45684.9
  • GRAVY: -0.687901

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    Signal transductionRegulatory functionsOthercell envelope-related function transcriptional attenuator common domain (TIGR00350; HMM-score: 115.1)
  • TheSEED:  
    Regulation and Cell signalingRegulation and Cell signaling - no subcategoryCell envelope-associated LytR-CpsA-Psr transcriptional attenuators Cell envelope-associated transcriptional attenuator LytR-CpsA-Psr, subfamily F2 (as in PMID19099556) 
  • PFAM:
    no clan definedLytR_cpsA_psr; Cell envelope-related transcriptional attenuator domain (PF03816; HMM-score: 142.2)
    Baculo_11_kDa; Baculovirus 11 kDa family (PF06143; HMM-score: 15.4)
    DUF1510; Protein of unknown function (DUF1510) (PF07423; HMM-score: 14.7)
    SCIMP; SCIMP protein (PF15050; HMM-score: 14.4)
    DUF2140; Uncharacterized protein conserved in bacteria (DUF2140) (PF09911; HMM-score: 14.2)
    Ctr; Ctr copper transporter family (PF04145; HMM-score: 10.5)
    C_Lectin (CL0056) Ly49; Ly49-like protein, N-terminal region (PF08391; HMM-score: 9.2)
    no clan definedDUF4834; Domain of unknown function (DUF4834) (PF16118; HMM-score: 8.7)
    Peptidase_AD (CL0130) Presenilin; Presenilin (PF01080; HMM-score: 5)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 9.68
    • Cellwall Score: 0.17
    • Extracellular Score: 0.16
    • Internal Helix: 1
  • LocateP: Secretory(released) (with CS)
    • Prediction by SwissProt Classification: Extracellular
    • Pathway Prediction: Sec-(SPI)
    • Intracellular Possibility: 0.17
    • Signal Peptide Possibility: 1
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: LFKTSQDA
  • SignalP: Signal peptide length 35 aa
    • Ymax: 0.473
    • Ymax_pos: 35
    • Cmax: 0.306
    • Cmax_pos: 35
    • Smax: 0.842
    • Smax_pos: 28
    • Smean: 0.621
    • D: 0.531
  • predicted transmembrane helices (TMHMM): 1

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MNKFLKYFLILLALVLIVVPIVFATLLFKTSQDAFESSQDSKNANRQSNLRDNKVNPEEQPISILFLGIDDNDGRRKKGQDAEHSRSDAMILTTFNQSKHQIRMLSIPRDTISYIPKVGYYDKITHAHAYGGPIAAMDSVEATMNVPVDYYVRVNMKAFVEAVNELGGIYYDVPYDLNEPNTDDTGKIKIKKGYQKLNGDEALAVARTRHHDSDLKRGQRQMELIKILFQKAQEVDSIDKLDNVIQIVGKNAKHNLTNSEIKALAKMYLTNDVEIKTAQLKGKDDMLNGIYYYHPSVESIQKYANLLRKDLELSPINDKNDFLDQRVINHYGSLIPLTPLDNSLLRKEQNDTTDKDKTSNENSDSTNNSDSSNQQQPATDQNSNQNQGGTQQAPQASNNQNGVVN

Experimental data[edit source | edit]

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]