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NCBI: 03-AUG-2016

Summary[edit source | edit]

  • organism: Staphylococcus aureus NCTC8325
  • locus tag: SAOUHSC_01810
  • pan locus tag?: SAUPAN004349000
  • symbol: SAOUHSC_01810
  • pan gene symbol?:
  • synonym:
  • product: NADP-dependent malic enzyme

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SAOUHSC_01810
  • symbol: SAOUHSC_01810
  • product: NADP-dependent malic enzyme
  • replicon: chromosome
  • strand: -
  • coordinates: 1712978..1714207
  • length: 1230
  • essential: no DEG other strains

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    ATGTCATTAAGAGATGAAGCATTGGAAATGCACAAACGTAATCAAGGTAAATTAGAAGTT
    AAACCAAATGTAAAAGTTACTAATAAAGAGGAATTAAGTTTAGCATACTCACCTGGCGTT
    GCTGAACCGTGTAAAGATATTTATGAAGATAAAAGAAAAGTATATGATTACACAATTAAA
    GGAAATACAGTTGCAGTTATTACTGATGGAACAGCGGTATTAGGTTTAGGTAACATTGGA
    CCTGAAGCAAGTATTCCTGTAATGGAAGGTAAAGCAGTATTATTCAAAAGCTTCGCTGGT
    ATCAATGGGGTGCCTATTGCGTTAAATACAACTGATACCGAAGAAATCATTAAAACAGTT
    AAGTTGTTAGAACCTAATTATGGTGGTATTAATTTAGAGGATATTTCGGCACCACGTTGT
    TTTGAAATTGAAGAACGATTGAAAAAAGAAACTAATATTCCGGTATTCCATGACGATCAA
    CATGGTACAGCAATTGTAACATTGGCAGGTTTGGTAAATGCATTGAGAGTTGTTAACAAA
    GATATTGCTAAAATAAAAGTTGTACTAAATGGTGCTGGTGCAGCAGGAATAGCCATTGTT
    AAATTACTATACGCGTATGGTGTAAGAAATATGGTTATGTGTGACTCAAGAGGCGCAATT
    TTTGAAGGACGTTCATATGGTATGAATCCTACGAAAGATGTTGTAGCAAAATGGACAAAT
    AAAGATAAGATTGAAGGGTCTTTAGAAGAAGTCGTAAAAGACGCAGATGTATTTATCGGG
    GTTTCTGTAGCTAATGCGCTGTCACAAGATATGGTTAAGAGTATGGCAGATAATCCAATT
    ATATTTGCAATGGCTAATCCAAATCCTGAAATAATACCTGATGATGCCAAAGCGGCAGGT
    GCACGAGTTGTTGGTACAGGACGTTCAGACTATCCTAACCAAATTAATAATGTATTAGCT
    TTCCCTGGTATTTTTAGAGGTGCATTAGAGGTTGAAGCTACACATATAAATGAAGAAATG
    AAAAAGGCAGCTGTAGAAGCGATTGCTGATTTAATCGATAGTTCTGAATTAAATGAAGAC
    TACTGTATCCCAGGACCGTTTGATAAACGTGTAGCGCCATCAGTTGCTCGTAATGTTGCT
    AAAGCGGCAATGGAATCTGGAGTAGCTAGGATTGAAGTTGATCCGCAAGATGTGTATGAT
    AAAACAATGAAACTTACAGATTTACAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1230

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SAOUHSC_01810
  • symbol: SAOUHSC_01810
  • description: NADP-dependent malic enzyme
  • length: 409
  • theoretical pI: 4.81628
  • theoretical MW: 44233.4
  • GRAVY: -0.122738

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    E1-like protein-activating enzyme Gsa7p/Apg7p (TIGR01381; HMM-score: 13.3)
  • TheSEED:  
    CarbohydratesCentral carbohydrate metabolismPyruvate metabolism I: anaplerotic reactions, PEP NADP-dependent malic enzyme (EC 1.1.1.40) 
  • PFAM:
    AA_dh_N (CL0603) malic; Malic enzyme, N-terminal domain (PF00390; HMM-score: 109.6)
    NADP_Rossmann (CL0063) Malic_M; Malic enzyme, NAD binding domain (PF03949; HMM-score: 92.5)
    ELFV_dehydrog; Glutamate/Leucine/Phenylalanine/Valine dehydrogenase (PF00208; HMM-score: 15.4)
    ThiF; ThiF family (PF00899; HMM-score: 15.1)
    no clan definedGly_rich_SFCGS; Glycine-rich SFCGS (PF14272; HMM-score: 13.2)
    NADP_Rossmann (CL0063) DapB_N; Dihydrodipicolinate reductase, N-terminus (PF01113; HMM-score: 13.2)
    FAD_binding_3; FAD binding domain (PF01494; HMM-score: 12.6)
    Shikimate_DH; Shikimate / quinate 5-dehydrogenase (PF01488; HMM-score: 9.7)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors: Mg2+, Mn2+
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular Possibility: 1
    • Signal Peptide Possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.135
    • Ymax_pos: 18
    • Cmax: 0.113
    • Cmax_pos: 42
    • Smax: 0.222
    • Smax_pos: 2
    • Smean: 0.181
    • D: 0.153
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MSLRDEALEMHKRNQGKLEVKPNVKVTNKEELSLAYSPGVAEPCKDIYEDKRKVYDYTIKGNTVAVITDGTAVLGLGNIGPEASIPVMEGKAVLFKSFAGINGVPIALNTTDTEEIIKTVKLLEPNYGGINLEDISAPRCFEIEERLKKETNIPVFHDDQHGTAIVTLAGLVNALRVVNKDIAKIKVVLNGAGAAGIAIVKLLYAYGVRNMVMCDSRGAIFEGRSYGMNPTKDVVAKWTNKDKIEGSLEEVVKDADVFIGVSVANALSQDMVKSMADNPIIFAMANPNPEIIPDDAKAAGARVVGTGRSDYPNQINNVLAFPGIFRGALEVEATHINEEMKKAAVEAIADLIDSSELNEDYCIPGPFDKRVAPSVARNVAKAAMESGVARIEVDPQDVYDKTMKLTDLQ

Experimental data[edit source | edit]

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

  1. Maren Depke, Stephan Michalik, Alexander Rabe, Kristin Surmann, Lars Brinkmann, Nico Jehmlich, Jörg Bernhardt, Michael Hecker, Bernd Wollscheid, Zhi Sun, Robert L Moritz, Uwe Völker, Frank Schmidt
    A peptide resource for the analysis of Staphylococcus aureus in host-pathogen interaction studies.
    Proteomics: 2015, 15(21);3648-3661
    [PubMed:26224020] [WorldCat.org] [DOI] (I p)
  2. Ulrike Mäder, Pierre Nicolas, Maren Depke, Jan Pané-Farré, Michel Debarbouille, Magdalena M van der Kooi-Pol, Cyprien Guérin, Sandra Dérozier, Aurelia Hiron, Hanne Jarmer, Aurélie Leduc, Stephan Michalik, Ewoud Reilman, Marc Schaffer, Frank Schmidt, Philippe Bessières, Philippe Noirot, Michael Hecker, Tarek Msadek, Uwe Völker, Jan Maarten van Dijl
    Staphylococcus aureus Transcriptome Architecture: From Laboratory to Infection-Mimicking Conditions.
    PLoS Genet.: 2016, 12(4);e1005962
    [PubMed:27035918] [WorldCat.org] [DOI] (I e)

Relevant publications[edit source | edit]