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NCBI: 03-AUG-2016

Summary[edit source | edit]

  • organism: Staphylococcus aureus NCTC8325
  • locus tag: SAOUHSC_02672
  • pan locus tag?: SAUPAN005918000
  • symbol: SAOUHSC_02672
  • pan gene symbol?:
  • synonym:
  • product:

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: pseudogene
  • locus tag: SAOUHSC_02672
  • symbol: SAOUHSC_02672
  • product:
  • replicon: chromosome
  • strand: +
  • coordinates: 2457007..2457921
  • length: 915
  • essential: no DEG other strains

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    ATGTATAAAATCAATATTATTAGATCAGATTCCGTCTATAATAATATACTCAAGGCACCA
    ATAAACGACCGTGATTCAATTTTCACTAAAGAAATATTAGTACCTTTTAAAAAGAAATTT
    GAGGTACAACATATGCCTATTTATAATGATGACAAACAGACAATGAGTGCGATTCAATTT
    TTAGATGCCTTTCAAATTTCTCCCAAAGATTTACGCATGTCTGACCAAATGTCAATACAA
    TACCTGAATAATGATTTCTGGAGTAATTGCGAAAAATATTTAAAAGTTGCTATAGATCAA
    TTTTCAAATTATAGTATCTCATCTCAAGTTTCTAACTATCATTTCACAGTATTACTTGGA
    GATCGCCAAAAACCACTTATGTATCTAAATAAAAATCGCGGTGGTGATGGTGGCATACCA
    GGTTATATTATGATTTATTTAGTGCCGAGTACAAGTACAATTAATTCTATGAAAAGCTTA
    ATTGCACATGAAGTAAATCATAATATGCGCTATCAATATATTGATTGGGATGGCGGAAGT
    TTGATTGAATTGATTATTGCAGAAGGATTAGCTGAAAACTATGTAGAATCATTGTATGGT
    AAAGCGCATATTGGACCGTGGGTAACAAATACTAATTGAAGTCGTGATAACGTAAAAATT
    AAAAATACTATTTATAATCATTTACATTTAAAGCATATATTTGAATCGATGCCTTATCTC
    TATGGTGATGATATTAATAAACTTCAAGGTAGGCCTATCGTTGGCTTATCTCATGCTGCC
    GGGTATGCATGTGGCTATCACTTGGTAAAATACTTTTTACAAAAAACAAACATACCTATT
    GAAGTTGCTACAACACTTCCAGCACAAAAAATAATAAATGAGGTGACTGAATTTTGGCAT
    ACACATACACTTTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    915

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SAOUHSC_02672
  • symbol: SAOUHSC_02672
  • description:
  • length: 0
  • theoretical pI:
  • theoretical MW:
  • GRAVY:

Function[edit source | edit]

  • TIGRFAM:
  • TheSEED:  
    FIG01108860: hypothetical protein 
  • PFAM:

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb:
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular Possibility: 1
    • Signal Peptide Possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP:
  • predicted transmembrane helices (TMHMM):

Accession numbers[edit source | edit]

  • GI:
  • RefSeq:
  • UniProt: Q2FVN0 UniProt

Protein sequence[edit source | edit]

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

  1. Ulrike Mäder, Pierre Nicolas, Maren Depke, Jan Pané-Farré, Michel Debarbouille, Magdalena M van der Kooi-Pol, Cyprien Guérin, Sandra Dérozier, Aurelia Hiron, Hanne Jarmer, Aurélie Leduc, Stephan Michalik, Ewoud Reilman, Marc Schaffer, Frank Schmidt, Philippe Bessières, Philippe Noirot, Michael Hecker, Tarek Msadek, Uwe Völker, Jan Maarten van Dijl
    Staphylococcus aureus Transcriptome Architecture: From Laboratory to Infection-Mimicking Conditions.
    PLoS Genet.: 2016, 12(4);e1005962
    [PubMed:27035918] [WorldCat.org] [DOI] (I e)

Relevant publications[edit source | edit]