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NCBI: 03-AUG-2016

Summary[edit source | edit]

  • organism: Staphylococcus aureus NCTC8325
  • locus tag: SAOUHSC_02961
  • pan locus tag?: SAUPAN006354000
  • symbol: SAOUHSC_02961
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SAOUHSC_02961
  • symbol: SAOUHSC_02961
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2721391..2721846
  • length: 456
  • essential: no DEG other strains

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    ATGTCGACCAATAAAAACGATTATGAGCATATGTTGTTTTATTTTGCATATAAAACCTTT
    ATTACTACCGCTGATGAAATTATAGAGAAGTATGGTATGAGTCGTCAGCATCATCGTTTT
    TTGTTTTTTATCAATAAATTACCTGGTATTACTATTAAATCATTACTAGAAATATTAGAA
    ATTTCTAAACAAGGATCACATGCAACACTTCAAAAATTAAAAGAGCAAGGTCTCATTATT
    GAAAAAGTTTTAGAGACTGATCGACGTGTCAAAAAATTATATTCGACGGATAAAGGCGAT
    CAACTCATTGCTGAATTGAACAAGGCGCAAGATGAATTATTGCAAAATATATATCAACAA
    GTCGGTTCGGATTGGTATGATGTGATGGAAGCATTGGCTAAAGGGCGACCTGGCTTTGAT
    TTTATTAAGCATTTGAAAGATGAAAAAGAAAGCTAG
    60
    120
    180
    240
    300
    360
    420
    456

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SAOUHSC_02961
  • symbol: SAOUHSC_02961
  • description: hypothetical protein
  • length: 151
  • theoretical pI: 7.09112
  • theoretical MW: 17692.2
  • GRAVY: -0.531126

Function[edit source | edit]

  • TIGRFAM:
    mobile rSAM pair MarR family regulator (TIGR04472; HMM-score: 29.6)
    homoprotocatechuate degradation operon regulator, HpaR (TIGR02337; HMM-score: 24.7)
    and 1 more
    Genetic information processingDNA metabolismDNA replication, recombination, and repairS4 domain protein YaaA (TIGR02988; HMM-score: 13.4)
  • TheSEED:  
    Transcriptional regulator, MarR family 
  • PFAM:
    HTH (CL0123) MarR_2; MarR family (PF12802; HMM-score: 38.8)
    and 11 more
    HTH_11; HTH domain (PF08279; HMM-score: 22.5)
    HTH_27; Winged helix DNA-binding domain (PF13463; HMM-score: 22.1)
    HTH_24; Winged helix-turn-helix DNA-binding (PF13412; HMM-score: 21)
    no clan definedPhaP_Bmeg; Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg) (PF09602; HMM-score: 17)
    HTH (CL0123) MarR; MarR family (PF01047; HMM-score: 14.9)
    no clan definedCBP_GIL; GGDEF I-site like or GIL domain (PF10995; HMM-score: 14.5)
    HTH (CL0123) Myb_DNA-bind_6; Myb-like DNA-binding domain (PF13921; HMM-score: 13.6)
    HxlR; HxlR-like helix-turn-helix (PF01638; HMM-score: 13.5)
    TrmB; Sugar-specific transcriptional regulator TrmB (PF01978; HMM-score: 12.2)
    HTH_20; Helix-turn-helix domain (PF12840; HMM-score: 11.9)
    no clan definedRibosomal_S14; Ribosomal protein S14p/S29e (PF00253; HMM-score: 11.8)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular Possibility: 1
    • Signal Peptide Possibility: -1
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.114
    • Ymax_pos: 69
    • Cmax: 0.12
    • Cmax_pos: 27
    • Smax: 0.148
    • Smax_pos: 62
    • Smean: 0.082
    • D: 0.102
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MSTNKNDYEHMLFYFAYKTFITTADEIIEKYGMSRQHHRFLFFINKLPGITIKSLLEILEISKQGSHATLQKLKEQGLIIEKVLETDRRVKKLYSTDKGDQLIAELNKAQDELLQNIYQQVGSDWYDVMEALAKGRPGFDFIKHLKDEKES

Experimental data[edit source | edit]

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

  1. Stephan Michalik, Maren Depke, Annette Murr, Manuela Gesell Salazar, Ulrike Kusebauch, Zhi Sun, Tanja C Meyer, Kristin Surmann, Henrike Pförtner, Petra Hildebrandt, Stefan Weiss, Laura Marcela Palma Medina, Melanie Gutjahr, Elke Hammer, Dörte Becher, Thomas Pribyl, Sven Hammerschmidt, Eric W Deutsch, Samuel L Bader, Michael Hecker, Robert L Moritz, Ulrike Mäder, Uwe Völker, Frank Schmidt
    A global Staphylococcus aureus proteome resource applied to the in vivo characterization of host-pathogen interactions.
    Sci Rep: 2017, 7(1);9718
    [PubMed:28887440] [WorldCat.org] [DOI] (I e)
  2. Maren Depke, Stephan Michalik, Alexander Rabe, Kristin Surmann, Lars Brinkmann, Nico Jehmlich, Jörg Bernhardt, Michael Hecker, Bernd Wollscheid, Zhi Sun, Robert L Moritz, Uwe Völker, Frank Schmidt
    A peptide resource for the analysis of Staphylococcus aureus in host-pathogen interaction studies.
    Proteomics: 2015, 15(21);3648-61
    [PubMed:26224020] [WorldCat.org] [DOI] (I p)
  3. Ulrike Mäder, Pierre Nicolas, Maren Depke, Jan Pané-Farré, Michel Debarbouille, Magdalena M van der Kooi-Pol, Cyprien Guérin, Sandra Dérozier, Aurelia Hiron, Hanne Jarmer, Aurélie Leduc, Stephan Michalik, Ewoud Reilman, Marc Schaffer, Frank Schmidt, Philippe Bessières, Philippe Noirot, Michael Hecker, Tarek Msadek, Uwe Völker, Jan Maarten van Dijl
    Staphylococcus aureus Transcriptome Architecture: From Laboratory to Infection-Mimicking Conditions.
    PLoS Genet.: 2016, 12(4);e1005962
    [PubMed:27035918] [WorldCat.org] [DOI] (I e)

Relevant publications[edit source | edit]