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⊟Summary[edit | edit source]
- pan ID?: SAUPAN000859000
- symbol?: —
- synonym:
- description?: tandem-type lipoprotein
- tandem-type lipoprotein
- staphylococcal tandem lipoprotein
- tandem lipoprotein
- lipoprotein
- pseudogene
- putative lipoprotein
- putative lipoprotein, truncated
- staphylococcus tandem lipoproteins family protein
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 1128174..1128945
- synteny block?: BlockID0004200
- occurrence?: in 85% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_0097
08BA02176:
—
11819-97:
MS7_0091
6850:
RSAU_000051
71193:
—
ECT-R 2:
ECTR2_54
ED133:
SAOV_0050
ED98:
SAAV_0045
HO 5096 0412:
SAEMRSA15_00680
JH1:
SaurJH1_0088
JH9:
SaurJH9_0085
JKD6008:
SAA6008_00081
JKD6159:
SAA6159_00080
LGA251:
SARLGA251_00760
M013:
—
MRSA252:
SAR0106
MSHR1132:
—
MSSA476:
SAS0073
Mu3:
SAHV_0096
Mu50:
SAV0097
MW2:
MW0072
RF122:
SAB0039
ST398:
—
T0131:
SAT0131_00083
TCH60:
HMPREF0772_10394
TW20:
SATW20_01150
USA300_TCH1516:
USA300HOU_0110
VC40:
SAVC_00235
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MIKRVNKLVLGISLLFLVISITAGCGMGKEAEIKKSFEKTLSMYPIKNLEDLYDKEGYRD
N315 MIKRVNKLVLGISFLFLIISIFAGCGTGKEAEIKKSFEKTLSMYPIKNLEDLYDKEGYRD
NCTC8325 MIKRVNKLVLGISLLFLVISITAGCGMGKEAEIKKSFEKTLSMYPIKNLEDLYDKEGYRD
Newman MIKRVNKLVLGISLLFLVISITAGCGMGKEAEIKKSFEKTLSMYPIKNLEDLYDKEGYRD
USA300_FPR3757 MIKRVNKLVLGISLLFLVISITAGCGMGKEAEIKKSFEKTLSMYPIKNLEDLYDKEGYRD
*************:***:*** **** *********************************
COL DQFDKNDKGTWIVNSQMAIQNKGEALKIKGMLLKIDRNTRSAKGFYYTNEIKTEKYEVAQ
N315 DQFDKNDKGTWIVRSSMSIQSNGKDMNIKGMVLYMNRNTRTTNGYYYVDVIEREDKGIHR
NCTC8325 DQFDKNDKGTWIVNSQMAIQNKGEALKIKGMLLKIDRNTRSAKGFYYTNEIKTEKYEVAQ
Newman DQFDKNDKGTWIVNSQMAIQNKGEALKIKGMLLKIDRNTRSAKGFYYTNEIKTEKYEVAQ
USA300_FPR3757 DQFDKNDKGTWIVNSQMAIQNKGEALKIKGMLLKIDRNTRSAKGFYYTNEIKTEKYEVAQ
*************.*.*:**.:*: ::****:* ::****:::*:**.: *: *. : :
COL DNQKKYPVKMINNKFISTEEVKEENIKKEIENFKFFAQYSNFKDLMNYKDGDISYNPEVP
N315 DNEKRYPVKMVDNKIIPTKEIKDEKIKKEIENFKFFVQYGDFKDLSKYKDGDISYNPEVP
NCTC8325 DNQKKYPVKMINNKFISTEEVKEENIKKEIENFKFFAQYSNFKDLMNYKDGDISYNPEVP
Newman DNQKKYPVKMINNKFISTEEVKEENIKKEIENFKFFAQYSNFKDLMNYKDGDISYNPEVP
USA300_FPR3757 DNQKKYPVKMINNKFISTEEVKEENIKKEIENFKFFAQYSNFKDLMNYKDGDISYNPEVP
**:*:*****::**:*.*:*:*:*:***********.**.:**** :*************
COL SYSAQYQLTNDDYNVKQLRKRYDIPTNKAPKLLLKGTGNLKGSSVGYKKIEFTFLENKNE
N315 SYSAKYQLTNDDYNVKQLRKRYNIPTNKAPKLLLKGTGNLKGSSIGYKKIEFTFVEKKGE
NCTC8325 SYSAQYQLTNDDYNVKQLRKRYDIPTNKAPKLLLKGTGNLKGSSVGYKKIEFTFLENKNE
Newman SYSAQYQLTNDDYNVKQLRKRYDIPTNKAPKLLLKGTGNLKGSSVGYKKIEFTFLENKNE
USA300_FPR3757 SYSAQYQLTNDDYNVKQLRKRYDIPTNKAPKLLLKGTGNLKGSSVGYKKIEFTFLENKNE
****:*****************:*********************:*********:*:*.*
COL NIYFTDSLHLEPSEDK
N315 NIYFSDGLHFNPSEDK
NCTC8325 NIYFTDSLHLEPSEDK
Newman NIYFTDSLHLEPSEDK
USA300_FPR3757 NIYFTDSLHLEPSEDK
****:*.**::*****