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Summary[edit source | edit]

  • pan ID?: SAUPAN001014000
  • symbol?:
  • description?: hypothetical protein
  • strand?: +
  • coordinates?: 1280032..1280286
  • synteny block?: BlockID0005420
  • occurrence?: in 84% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_0177
    08BA02176:
    C248_0165
    11819-97:
    MS7_0169
    71193:
    ST398NM01_0190
    ECT-R 2:
    ED133:
    ED98:
    SAAV_0143
    HO 5096 0412:
    SAEMRSA15_01410
    JH1:
    SaurJH1_0166
    JH9:
    SaurJH9_0161
    JKD6008:
    SAA6008_00153
    JKD6159:
    LGA251:
    M013:
    MRSA252:
    SAR0177
    MSHR1132:
    SAMSHR1132_01490
    MSSA476:
    SAS0151
    Mu3:
    SAHV_0175
    Mu50:
    SAV0176
    MW2:
    MW0150
    RF122:
    SAB0116
    ST398:
    SAPIG0190
    T0131:
    SAT0131_00167
    TCH60:
    HMPREF0772_10323
    TW20:
    SATW20_01860
    USA300_TCH1516:
    USA300HOU_0189
    VC40:
    SAVC_00645

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MNTIDTHTKEQQFSNLVRSYRKEYVGKGPNSIRVSFKDNWAIAHMTGVLSKVESFYLNDK
    N315            ---MDTHTKEQQFSNLVRSYRKEYVGKGPNSIRVSFKDNWAIAHMTGVLSKVESFYLNDK
    NCTC8325        MNTIDTHTKEQQFSNLVRSYRKEYVGKGPNSIRVSFKDNWAIAHMTGVLSKVESFYLNDK
    Newman          MNTIDTHTKEQQFSNLVRSYRKEYVGKGPNSIRVSFKDNWAIAHMTGVLSKVESFYLNDK
    USA300_FPR3757  MNTIDTHTKEQQFSNLVRSYRKEYVGKGPNSIRVSFKDNWAIAHMTGVLSKVESFYLNDK
                       :********************************************************

    COL             RNESMLHYTRTEKIKQMYKEIDVNEMESLVGAKFVKLFTDIDLNDDEVISIFVFDKSIE
    N315            RNESMLHYTRTEKIKQMYKEIDVNEMESLVGAKFVKLFTDIDLNDDEVISIFVFDKSIE
    NCTC8325        RNESMLHYTRTEKIKQMYKEIDVNEMESLVGAKFVKLFTDIDLNDDEVISIFVFDKSIE
    Newman          RNESMLHYTRTEKIKQMYKEIDVNEMESLVGAKFVKLFTDIDLNDDEVISIFVFDKSIE
    USA300_FPR3757  RNESMLHYTRTEKIKQMYKEIDVNEMESLVGAKFVKLFTDIDLNDDEVISIFVFDKSIE
                    ***********************************************************