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Summary[edit source | edit]

  • pan ID?: SAUPAN001107000
  • symbol?: ldh1
  • description?: L-lactate dehydrogenase

      descriptions from strain specific annotations:

    • L-lactate dehydrogenase
    • L-lactate dehydrogenase 1
  • strand?: +
  • coordinates?: 1384835..1385788
  • synteny block?: BlockID0006270
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL0222 (ldh1)
    N315:
    SA0232 (lctE)
    NCTC8325:
    Newman:
    NWMN_0176 (ldh1)
    USA300_FPR3757:
    04-02981:
    SA2981_0241 (lctE)
    08BA02176:
    C248_0226 (ldh1)
    11819-97:
    MS7_0227
    71193:
    ST398NM01_0252
    ECT-R 2:
    ECTR2_201
    ED133:
    SAOV_0178 (ldh1)
    ED98:
    SAAV_0206 (ldh1)
    HO 5096 0412:
    SAEMRSA15_02000 (ldh1)
    JH1:
    SaurJH1_0231
    JH9:
    SaurJH9_0225
    JKD6008:
    SAA6008_00211 (ldh)
    JKD6159:
    SAA6159_00218 (ldh)
    LGA251:
    SARLGA251_02050 (ldh1)
    M013:
    M013TW_0220
    MRSA252:
    SAR0234 (ldh1)
    MSHR1132:
    SAMSHR1132_02090
    MSSA476:
    SAS0217
    Mu3:
    SAHV_0240 (lctE)
    Mu50:
    SAV0241 (lctE)
    MW2:
    MW0217 (lctE)
    RF122:
    SAB0180
    ST398:
    SAPIG0252
    T0131:
    SAT0131_00231 (aroE)
    TCH60:
    HMPREF0772_10263 (ldhA)
    TW20:
    SATW20_02430 (ldh1)
    USA300_TCH1516:
    USA300HOU_0251 (ldh)
    VC40:
    SAVC_00945

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MNKFKGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPT
    N315            MNKFKGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPT
    NCTC8325        ------------------------------------------------MDLKHATPYSPT
    Newman          MNKFKGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPT
    USA300_FPR3757  ------------------------------------------------MDLKHATPYSPT
                                                                    ************

    COL             TVRVKAGEYSDCHDADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFL
    N315            TVRVKAGEYSDCHDADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFL
    NCTC8325        TVRVKAGEYSDCHDADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFL
    Newman          TVRVKAGEYSDCHDADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFL
    USA300_FPR3757  TVRVKAGEYSDCHDADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFL
                    ************************************************************

    COL             VATNPVDILAYATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQIIGEHG
    N315            VATNPVDILAYATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQIIGEHG
    NCTC8325        VATNPVDILAYATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQIIGEHG
    Newman          VATNPVDILAYATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQIIGEHG
    USA300_FPR3757  VATNPVDILAYATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQIIGEHG
                    ************************************************************

    COL             DTELPVWSHANIAGQPLKTLLEQRPEGKAQIEQIFVQTRDAAYDIIQAKGATYYGVAMGL
    N315            DTELPVWSHANIAGQPLKTLLEQRPEGKAQIEQIFVQTRDAAYDIIQAKGATYYGVAMGL
    NCTC8325        DTELPVWSHANIAGQPLKTLLEQRPEGKAQIEQIFVQTRDAAYDIIQAKGATYYGVAMGL
    Newman          DTELPVWSHANIAGQPLKTLLEQRPEGKAQIEQIFVQTRDAAYDIIQAKGATYYGVAMGL
    USA300_FPR3757  DTELPVWSHANIAGQPLKTLLEQRPEGKAQIEQIFVQTRDAAYDIIQAKGATYYGVAMGL
                    ************************************************************

    COL             ARITEAIFRNEDAVLTVSALLEGEYEEEDVYIGVPAVINRNGIRNVVEIPLNDEEQSKFA
    N315            ARITEAIFRNEDAVLTVSALLEGEYDEEDVYIGVPAVINRNGIRNVVEIPLNDEEQSKFA
    NCTC8325        ARITEAIFRNEDAVLTVSALLEGEYEEEDVYIGVPAVINRNGIRNVVEIPLNDEEQSKFA
    Newman          ARITEAIFRNEDAVLTVSALLEGEYEEEDVYIGVPAVINRNGIRNVVEIPLNDEEQSKFA
    USA300_FPR3757  ARITEAIFRNEDAVLTVSALLEGEYEEEDVYIGVPAVINRNGIRNVVEIPLNDEEQSKFA
                    *************************:**********************************

    COL             HSAKTLKDIMAEAEELK
    N315            HSAKTLKDIMAEAEELK
    NCTC8325        HSAKTLKDIMAEAEELK
    Newman          HSAKTLKDIMAEAEELK
    USA300_FPR3757  HSAKTLKDIMAEAEELK
                    *****************