From AureoWiki
Jump to: navigation, search

Summary[edit source | edit]

  • pan ID?: SAUPAN001187000
  • symbol?: esaE
  • description?: DUF5081 domain-containing protein
  • strand?: +
  • coordinates?: 1457183..1458536
  • synteny block?: BlockID0007040
  • occurrence?: in 66% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_0290
    08BA02176:
    11819-97:
    MS7_0281
    71193:
    ECT-R 2:
    ECTR2_251
    ED133:
    SAOV_0233
    ED98:
    SAAV_0258
    HO 5096 0412:
    JH1:
    SaurJH1_0281
    JH9:
    SaurJH9_0274
    JKD6008:
    JKD6159:
    SAA6159_00271
    LGA251:
    M013:
    MRSA252:
    MSHR1132:
    SAMSHR1132_02580
    MSSA476:
    SAS0266
    Mu3:
    SAHV_0288
    Mu50:
    SAV0291
    MW2:
    MW0266
    RF122:
    SAB0231
    ST398:
    T0131:
    TCH60:
    TW20:
    USA300_TCH1516:
    USA300HOU_0305
    VC40:
    SAVC_01205

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             -MKDVKRIDYFSYEELTILGGSKLPLVNFELFDPSNFEEAKAALIEKELVTENDKLTDAG
    N315            MMKDVKRIDYFSYEELTILGGSKLPLVNFELFDPSNFEEAKVALIEKELVTENDKLTDAG
    NCTC8325        -MKDVKRIDYFSYEELTILGGSKLPLVNFELFDPSNFEEAKAALIEKELVTENDKLTDAG
    Newman          -MKDVKRIDYFSYEELTILGGSKLPLVNFELFDPSNFEEAKAALIEKELVTENDKLTDAG
    USA300_FPR3757  -MKDVKRIDYFSYEELTILGGSKLPLVNFELFDPSNFEEAKAALIEKELVTENDKLTDAG
                     ****************************************.******************

    COL             FKVATLVREYISAIVNIRINDMYFAPFSYEKDEYILLSRFKNNGFQIRIINKDIAWWSIV
    N315            FKVATLVREYISAIVNIRINDMYFAPFSYEKDEYILLSRFKNNGFQIRIINKDIAWWSIV
    NCTC8325        FKVATLVREYISAIVNIRINDMYFAPFSYEKDEYILLSRFKNNGFQIRIINKDIAWWSIV
    Newman          FKVATLVREYISAIVNIRINDMYFAPFSYEKDEYILLSRFKNNGFQIRIINKDIAWWSIV
    USA300_FPR3757  FKVATLVREYISAIVNIRINDMYFAPFSYEKDEYILLSRFKNNGFQIRIINKDIAWWSIV
                    ************************************************************

    COL             QSYPLLMRQEKSNDWDFKQIDDETLENLNNESIDTIGRVLEIEIYNHQGDPQQSLYNIYE
    N315            QSYPLLMRQEKSNDWDFKQIDDEILENLNNESIDTIGRVLEIEIYNHQGDPQQSLYNIYE
    NCTC8325        QSYPLLMRQEKSNDWDFKQIDDETLENLNNESIDTIGRVLEIEIYNHQGDPQQSLYNIYE
    Newman          QSYPLLMRQEKSNDWDFKQIDDETLENLNNESIDTIGRVLEIEIYNHQGDPQQSLYNIYE
    USA300_FPR3757  QSYPLLMRQEKSNDWDFKQIDDETLENLNNESIDTIGRVLEIEIYNHQGDPQQSLYNIYE
                    *********************** ************************************

    COL             QNDLLFIRYPLKDKVLNVHIGVINTFIRELFGFDTDENHINKAEE
    N315            QNDLLLIRYPLKDKVLNVHIGVINTFIRELFGFDTDENHINKAEE
    NCTC8325        QNDLLFIRYPLKDKVLNVHIGVINTFIRELFGFDTDENHINKAEE
    Newman          QNDLLFIRYPLKDKVLNVHIGVINTFIRELFGFDTDENHINKAEE
    USA300_FPR3757  QNDLLFIRYPLKDKVLNVHIGVINTFIRELFGFDTDENHINKAEE
                    *****:***************************************