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Summary[edit source | edit]

  • pan ID?: SAUPAN001221000
  • symbol?:
  • description?: putative lipoprotein

      descriptions from strain specific annotations:

    • putative lipoprotein
    • lipoprotein, putative
    • pseudogene
  • strand?: +
  • coordinates?: 1509460..1509868
  • synteny block?: BlockID0007320
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_0302
    08BA02176:
    C248_0291
    11819-97:
    MS7_0293
    71193:
    ST398NM01_0316
    ECT-R 2:
    ECTR2_263
    ED133:
    SAOV_0255
    ED98:
    SAAV_0270
    HO 5096 0412:
    SAEMRSA15_02590
    JH1:
    SaurJH1_0293
    JH9:
    SaurJH9_0286
    JKD6008:
    SAA6008_00278
    JKD6159:
    SAA6159_00278
    LGA251:
    SARLGA251_02650
    M013:
    M013TW_0284
    MRSA252:
    SAR0299
    MSHR1132:
    SAMSHR1132_02770
    MSSA476:
    SAS0280
    Mu3:
    SAHV_0300
    Mu50:
    SAV0303
    MW2:
    MW0280
    RF122:
    SAB0240
    ST398:
    SAPIG0316
    T0131:
    SAT0131_00302
    TCH60:
    HMPREF0772_10193
    TW20:
    SATW20_03080
    USA300_TCH1516:
    USA300HOU_0322
    VC40:
    SAVC_01265

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MKRILVVFLMLAIILAGCSNKGEKYQKDIDKVYKEQNQMNKIASKVQNTIKTDIKQEDSN
    N315            MKRILVVFLMLAIILAGCSNKGEKYQKDIDKVYKEQNQMNKIASKVQNTIKTDIKQEDSN
    NCTC8325        MKRILVVFLMLAIILAGCSNKGEKYQKDIDKVYKEQNQMNKIASKVQNTIKTDIKQEDSN
    Newman          MKRILVVFLMLAIILAGCSNKGEKYQKDIDKVYKEQNQMNKIASKVQNTIKTDIKQEDSN
    USA300_FPR3757  MKRILVVFLMLAIILAGCSNKGEKYQKDIDKVYKEQNQMNKIASKVQNTIKTDIKQEDSN
                    ************************************************************

    COL             THVYKDGKVIVIGIQLYKDREKMYYFAYEIKDGKAEINREIDPIKYMKDHKADYEDENVE
    N315            THVYKDGKVIVIGIQLYKDREKMYYFAYEIKDGKAEINREIDPIKYMKDHKADYEDENVE
    NCTC8325        THVYKDGKVIVIGIQLYKDREKMYYFAYEIKDGKAEINREIDPIKYMKDHKADYEDENVE
    Newman          THVYKDGKVIVIGIQLYKDREKMYYFAYEIKDGKAEINREIDPIKYMKDHKADYEDENVE
    USA300_FPR3757  THVYKDGKVIVIGIQLYKDREKMYYFAYEIKDGKAEINREIDPIKYMKDHKADYEDENVE
                    ************************************************************

    COL             VEKD
    N315            VEKD
    NCTC8325        VEKD
    Newman          VEKD
    USA300_FPR3757  VEKD
                    ****