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Pangenome04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40

Summary[edit source | edit]

  • pan ID?: SAUPAN001309000
  • symbol?:
  • description?: helix-turn-helix domain-containing protein

      descriptions from strain specific annotations:

    • helix-turn-helix domain-containing protein
    • phiSLT ORF 87-like protein DNA-binding protein
    • phage protein
    • phiSLT ORF 87-like protein, DNA-binding protein
    • putative DNA-binding protein
  • strand?: -
  • coordinates?: 1597386..1597649
  • synteny block?: BlockID0008070
  • occurrence?: in 31% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    08BA02176:
    11819-97:
    71193:
    ECT-R 2:
    ED133:
    ED98:
    HO 5096 0412:
    JH1:
    SaurJH1_0323
    JH9:
    SaurJH9_0314
    JKD6008:
    JKD6159:
    SAA6159_01406
    LGA251:
    M013:
    M013TW_1488
    MRSA252:
    MSHR1132:
    MSSA476:
    SAS0902
    Mu3:
    Mu50:
    MW2:
    MW1431
    RF122:
    ST398:
    T0131:
    TCH60:
    TW20:
    SATW20_03350
    USA300_TCH1516:
    USA300HOU_1481
    VC40:

Genome Viewer[edit source | edit]

COL chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MPKIIVPPTPENTYRGEEKFVKKLYATPTQIHQLFGVCRSTVYNWLKYYREDNLGVENLY
    USA300_FPR3757  MPKIIVPPTPENTYRGEEKFVKKLYATPTQIHQLFGVCRSTVYNWLKYYRKDNLGVENLY
                    **************************************************:*********

    COL             IDYSPTGTLINISKLEEYLIRKHKKWY
    USA300_FPR3757  IDYSPTGTLINISKLEEYLIRKHKKWY
                    ***************************