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Pangenome04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40

Summary[edit source | edit]

  • pan ID?: SAUPAN001439000
  • symbol?:
  • description?: phage related DNA polymerase family A

      descriptions from strain specific annotations:

    • phage related DNA polymerase family A
    • bacterophage DNA-directed DNA polymerase
    • phage encoded DNA polymerase I
  • strand?: -
  • coordinates?: 1711021..1718840
  • synteny block?: BlockID0009170
  • occurrence?: in 9% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    08BA02176:
    11819-97:
    71193:
    ECT-R 2:
    ED133:
    ED98:
    HO 5096 0412:
    JH1:
    JH9:
    JKD6008:
    JKD6159:
    LGA251:
    M013:
    MRSA252:
    MSHR1132:
    MSSA476:
    Mu3:
    Mu50:
    MW2:
    RF122:
    ST398:
    T0131:
    TCH60:
    TW20:
    USA300_TCH1516:
    USA300HOU_1473
    VC40:

Genome Viewer[edit source | edit]

NCTC8325 chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    NCTC8325        MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADYET
    USA300_FPR3757  MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET
                    *********************************************************:**

    NCTC8325        FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL
    USA300_FPR3757  FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL
                    ************************************************************

    NCTC8325        RLQSQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMAIA
    USA300_FPR3757  RLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA
                    ***.*****************************************************:**

    NCTC8325        NKIKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITGLEN
    USA300_FPR3757  HKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITGLEN
                    :************:***********************************:**********

    NCTC8325        PNSPTQLLAWLKDEQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSKTSVKKYNKMH
    USA300_FPR3757  PNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSKTSVKKYNKMH
                    *************:**********************************************

    NCTC8325        DMMCSDERVRGLFQFYGAGTGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFDDLDL
    USA300_FPR3757  DMMCSDERVRGLFQFYGAGTGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFDDLDL
                    ************************************************************

    NCTC8325        LLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGKIYE
    USA300_FPR3757  LLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGKIYE
                    ************************************************************

    NCTC8325        ASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQGLVD
    USA300_FPR3757  ASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQGLVD
                    ************************************************************

    NCTC8325        SWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKAL
    USA300_FPR3757  SWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRFYMKKGFLMIELPSGRALAYPKAS
                    **********************************:************************ 

    NCTC8325        VGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEALGFKIV
    USA300_FPR3757  VGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIV
                    ****************************************************** *****

    NCTC8325        GHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD
    USA300_FPR3757  GHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD
                    **************************************************