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Pangenome04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40

Summary[edit source | edit]

  • pan ID?: SAUPAN001826000
  • symbol?:
  • description?: phi13 family phage major tail protein

      descriptions from strain specific annotations:

    • phi13 family phage major tail protein
    • phage major tail , phi13 family protein
    • prophage L54a, major tail protein
    • phiSLT ORF213-like protein, major tail protein
  • strand?: -
  • coordinates?: 2272299..2272947
  • synteny block?: BlockID0012020
  • occurrence?: in 47% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    08BA02176:
    C248_0357
    11819-97:
    MS7_1460
    71193:
    ECT-R 2:
    ED133:
    ED98:
    SAAV_2024
    HO 5096 0412:
    SAEMRSA15_13660
    JH1:
    SaurJH1_1087
    JH9:
    SaurJH9_1067
    JKD6008:
    JKD6159:
    LGA251:
    M013:
    MRSA252:
    SAR1511
    MSHR1132:
    MSSA476:
    SAS0940
    Mu3:
    Mu50:
    MW2:
    MW1393
    RF122:
    ST398:
    SAPIG0381
    T0131:
    TCH60:
    HMPREF0772_11698
    TW20:
    USA300_TCH1516:
    USA300HOU_1445
    VC40:

Genome Viewer[edit source | edit]

COL chromosome
NCTC8325 chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MAEGQGSYKVGFKRLYVGVFNPEATKVVKRMTWEDEKGGTVDLNITGLAPDLVDMFASNK
    NCTC8325        MAEGQGSYKVGFKRLYVGVFNPEATKVVKRMTWEDEKGGTVDLNITGLAPDLVDMFASNK
    USA300_FPR3757  MAEGQGSYKVGFKRLYVGVFNPEATKVVKRMTWEDEKGGTVDLNITGLAPDLVDMFASNK
                    ************************************************************

    COL             RVWMKKQGTNEVKSDMSIFNIPSDDLNTVIGRTKDKNGTSWVGENTRAPYVTVIGESEDG
    NCTC8325        RVWMKKQGTNEVKSDMSIFNIPSDDLNTVIGRTKDKNGTSWVGENTRAPYVTVIGESEDG
    USA300_FPR3757  RVWMKKQGTNEVKSDMSIFNIPSDDLNTVIGRTKDKNGTSWVGENTRAPYVTVIGESEDG
                    ************************************************************

    COL             LTGQPVYVALLKGTFSLDSIEFKTRGEKAEAPEPTKLTGDWMNRKVDVDGTSQGIVYGYH
    NCTC8325        LTGQPVYVALLKGTFSLDSIEFKTRGEKAEAPEPTKLTGDWMNRKVDVDGTSQGIVYGYH
    USA300_FPR3757  LTGQPVYVALLKGTFSLDSIEFKTRGEKAEAPEPTKLTGDWMNRKVDVDGTSQGIVYGYH
                    ************************************************************

    COL             EGKEGEAEFFKKVFVGYTDSEDHSEDSAGSLPS
    NCTC8325        EGKEGEAEFFKKVFVGYTDSEDHSEDSAGSLPS
    USA300_FPR3757  EGKEGEAEFFKKVFVGYTDSEDHSEDSAGSLPS
                    *********************************