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Summary[edit source | edit]

  • pan ID?: SAUPAN001895000
  • symbol?:
  • description?: ABC transporter permease
  • strand?: +
  • coordinates?: 2382147..2382776
  • synteny block?: BlockID0012680
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_0350
    08BA02176:
    C248_0407
    11819-97:
    MS7_0342
    71193:
    ST398NM01_0432
    ECT-R 2:
    ECTR2_313
    ED133:
    SAOV_0376
    ED98:
    SAAV_0320
    HO 5096 0412:
    SAEMRSA15_03070
    JH1:
    SaurJH1_0410
    JH9:
    SaurJH9_0400
    JKD6008:
    SAA6008_00329
    JKD6159:
    SAA6159_00326
    LGA251:
    SARLGA251_03140
    M013:
    M013TW_0331
    MRSA252:
    SAR0349
    MSHR1132:
    SAMSHR1132_03250
    MSSA476:
    SAS0328
    Mu3:
    SAHV_0349
    Mu50:
    SAV0352
    MW2:
    MW0328
    RF122:
    SAB0302
    ST398:
    SAPIG0432
    T0131:
    SAT0131_00359 (rpmI)
    TCH60:
    HMPREF0772_10142
    TW20:
    SATW20_04200
    USA300_TCH1516:
    USA300HOU_0373
    VC40:
    SAVC_01510

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MKGMFLSSFYATRKQTYIYFIVAIIAAGYFAVFNPLMSSAMAGVMLITPITDNIKHEKDS
    N315            MKGMFLSSFYATRKQTYIYFIVAIIAAGYFAVFNPLMSSAMAGVMLITPITDNIKHEKDS
    NCTC8325        MKGMFLSSFYATRKQTYIYFIVAIIAAGYFAVFNPLMSSAMAGVMLITPITDNIKHEKDS
    Newman          MKGMFLSSFYATRKQTYIYFIVAIIAAGYFAVFNPLMSSAMAGVMLITPITDNIKHEKDS
    USA300_FPR3757  MKGMFLSSFYATRKQTYIYFIVAIIAAGYFAVFNPLMSSAMAGVMLITPITDNIKHEKDS
                    ************************************************************

    COL             RWMYYVSTLPVKRSDYIKSYFAFYLILFGASLMIGLVVTTIVTQSVMIGIMSGLMSFGII
    N315            RWMYYVSTLPVKRSDYIKSYFAFYLILFGASLMIGLVVTTIVTQSVMIGIMSGLMSFGII
    NCTC8325        RWMYYVSTLPVKRSDYIKSYFAFYLILFGASLMIGLVVTTIVTQSVMIGIMSGLMSFGII
    Newman          RWMYYVSTLPVKRSDYIKSYFAFYLILFGASLMIGLVVTTIVTQSVMIGIMSGLMSFGII
    USA300_FPR3757  RWMYYVSTLPVKRSDYIKSYFAFYLILFGASLMIGLVVTTIVTQSVMIGIMSGLMSFGII
                    ************************************************************

    COL             GAYSIIFPLTFKFGAENSNVIMICASILLLISFVVFFFIYGMVSGASALEFEKISTEGWL
    N315            GAYSIIFPLTFKFGAENSNVIMIVASILLLFSFVVFFFIYGMVSGASALEFEKISTEGWL
    NCTC8325        GAYSIIFPLTFKFGAENSNVIMICASILLLISFVVFFFIYGMVSGASALEFEKISTEGWL
    Newman          GAYSIIFPLTFKFGAENSNVIMICASILLLISFVVFFFIYGMVSGASALEFEKISTEGWL
    USA300_FPR3757  GAYSIIFPLTFKFGAENSNVIMICASILLLISFVVFFFIYGMVSGASALEFEKISTEGWL
                    *********************** ******:*****************************

    COL             VVIAYAVIGIVITSVSYILSIKIFNKQEL
    N315            VVIVYAVIGIVITSVSYILSIKIFNKQEL
    NCTC8325        VVIAYAVIGIVITSVSYMLSIKIFNKQEL
    Newman          VVIAYAVIGIVITSVSYILSIKIFNKQEL
    USA300_FPR3757  VVIAYAVIGIVITSVSYILSIKIFNKQEL
                    ***.*************:***********