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Pangenome04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40

Summary[edit source | edit]

  • pan ID?: SAUPAN002141000
  • symbol?: lpl4
  • description?: lipoprotein

      descriptions from strain specific annotations:

    • lipoprotein
    • putative lipoprotein
    • Tandem lipoprotein within Pathogenicity island
    • staphylococcus tandem lipoproteins family protein
  • strand?: +
  • coordinates?: 2643713..2644722
  • synteny block?: BlockID0014470
  • occurrence?: in 41% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    SA0400 (lpl4)
    NCTC8325:
    Newman:
    NWMN_0407 (lpl4nm)
    USA300_FPR3757:
    04-02981:
    SA2981_0416 (lpl4)
    08BA02176:
    11819-97:
    71193:
    ECT-R 2:
    ECTR2_375
    ED133:
    ED98:
    SAAV_0383
    HO 5096 0412:
    JH1:
    SaurJH1_0475
    JH9:
    SaurJH9_0463
    JKD6008:
    JKD6159:
    LGA251:
    M013:
    M013TW_0403
    MRSA252:
    MSHR1132:
    MSSA476:
    Mu3:
    SAHV_0438
    Mu50:
    SAV0440
    MW2:
    RF122:
    ST398:
    T0131:
    TCH60:
    TW20:
    USA300_TCH1516:
    USA300HOU_0442
    VC40:

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MKYKTERREAMGYLKRFALYISVMILIFAIAGCGKGNETKEDSKEEQIKKSFAKTLDMYP
    N315            ----------MRDSKRVVLYISIMVLSIFIIGCGKGNEIKEDAKEEQIKKSFAKTLDMYP
    Newman          ----------MKSIKRIGLCISLLILSIFVTSCDGDNKITGDSKETQNQKSFSKTLDMYP
    USA300_FPR3757  ----------MKSIKRIGLCISLLILSIFVTSCDGDNKITGDSKETQIKKSFSKTLDMYP
                              *   **. * **:::* : : .*. .*: . *:** * :***:*******

    COL             IKNLEDLYDKEGYRDGEFKKGDKGMWTIYTDFAKGNKSDELDDEGMVLNLDRNTRTAKGY
    N315            IKNLEDLYDKEGYRDGEFKKGDKGMWTIYTDFAKSNRPGVLDNEGMVLNLDRNTRTAKGY
    Newman          IKNLEDLYDKEGYRDGEFKKGDKGMWTIYTDFAKGNKSDELDDEGMVLNLDRNTRTAKGY
    USA300_FPR3757  IKNLEDLYDKEGYRDGEFKKGDKGMWTIYTDFAKGNKSDELDDEGMVLNLDRNTRTAKGY
                    **********************************.*:.. **:*****************

    COL             YFVKKFYEKDKLPDRKNYKVEMKNNKIILLDKVEDPNLKKRIENFKFFGQYANFKDLENY
    N315            YFVDTIYDNHENSYSKNYRVEMKNNKIILLDKVEDQKLKERIENFKFFGQYADFKSLKSY
    Newman          YFVKKFYEKDKLPDRKNYKVEMKNNKIILLDKVEDPNLKKRIENFKFFGQYANFKDLENY
    USA300_FPR3757  YFVKKFYEKDKLPDRKNYKVEMKNNKIILLDKVEDPNLKKRIENFKFFGQYANFKDLENY
                    ***..:*::.: .  ***:**************** :**:************:**.*:.*

    COL             NNGDVSINWNVPSYDVEYKMSNKDENVKQLRSRYNIPTDKAPMLKMHIDGDLKGSSVGYK
    N315            NHGDVSINSNVPSYDAKFKMSNKDENVKQLRSRYNIPTDKAPILKMHIDGDLKGSSVGYK
    Newman          NNGDVSINWNVPSYDVEYKMSNKDENVKQLRSRYNIPTDKAPMLKMHIDGDLKGSSVGYK
    USA300_FPR3757  NNGDVSINWNVPSYDVEYKMSNKDENVKQLRSRYNIPTEKAPMLKMHIDGDLKGSSVGYK
                    *:****** ******.::********************:***:*****************

    COL             RLEIDFSK-EGRDISVIDYLSYKPAKK----
    N315            KLEIDFSKEENSELSIVDSLNFQPAKNKDDE
    Newman          RLEIDFSK-EGRDISVIDYLSYKPAKK----
    USA300_FPR3757  RLEIDFSK-EGRDISVIDYLSYKPAKK----
                    :******* *. ::*::* *.::***: