PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN002141000
• symbol^?: lpl4
• synonym:
• description^?: tandem-type lipoprotein

  descriptions from strain specific annotations:

  • tandem-type lipoprotein
  • tandem lipoprotein
  • staphylococcal tandem lipoprotein
  • Tandem lipoprotein within Pathogenicity island
  • lipoprotein
  • putative lipoprotein
  • staphylococcus tandem lipoproteins family protein
• strand^?: +
• coordinates^?: 2643713..2644722
• synteny block^?: BlockID0014470
• occurrence^?: in 42% of 33 strains

⊟Orthologs

COL:
SACOL0481
N315:
SA0400 (lpl4)
NCTC8325:
—
Newman:
NWMN_0407 (lpl4nm)
USA300_FPR3757:
SAUSA300_0414
04-02981:
SA2981_0416 (lpl4)
08BA02176:
—
11819-97:
—
6850:
RSAU_000372
71193:
—
ECT-R 2:
ECTR2_375
ED133:
—
ED98:
SAAV_0383
HO 5096 0412:
—
JH1:
SaurJH1_0475
JH9:
SaurJH9_0463
JKD6008:
—
JKD6159:
—
LGA251:
—
M013:
M013TW_0403
MRSA252:
—
MSHR1132:
—
MSSA476:
—
Mu3:
SAHV_0438
Mu50:
SAV0440
MW2:
—
RF122:
—
ST398:
—
T0131:
—
TCH60:
—
TW20:
—
USA300_TCH1516:
USA300HOU_0442
VC40:
—

⊟Genome Viewer

COL
N315
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MKYKTERREAMGYLKRFALYISVMILIFAIAGCGKGNETKEDSKEEQIKKSFAKTLDMYP
  N315            ----------MRDSKRVVLYISIMVLSIFIIGCGKGNEIKEDAKEEQIKKSFAKTLDMYP
  Newman          ----------MKSIKRIGLCISLLILSIFVTSCDGDNKITGDSKETQNQKSFSKTLDMYP
  USA300_FPR3757  ----------MKSIKRIGLCISLLILSIFVTSCDGDNKITGDSKETQIKKSFSKTLDMYP
                            *   **. * **:::* : : .*. .*: . *:** * :***:*******
  
  COL             IKNLEDLYDKEGYRDGEFKKGDKGMWTIYTDFAKGNKSDELDDEGMVLNLDRNTRTAKGY
  N315            IKNLEDLYDKEGYRDGEFKKGDKGMWTIYTDFAKSNRPGVLDNEGMVLNLDRNTRTAKGY
  Newman          IKNLEDLYDKEGYRDGEFKKGDKGMWTIYTDFAKGNKSDELDDEGMVLNLDRNTRTAKGY
  USA300_FPR3757  IKNLEDLYDKEGYRDGEFKKGDKGMWTIYTDFAKGNKSDELDDEGMVLNLDRNTRTAKGY
                  **********************************.*:.. **:*****************
  
  COL             YFVKKFYEKDKLPDRKNYKVEMKNNKIILLDKVEDPNLKKRIENFKFFGQYANFKDLENY
  N315            YFVDTIYDNHENSYSKNYRVEMKNNKIILLDKVEDQKLKERIENFKFFGQYADFKSLKSY
  Newman          YFVKKFYEKDKLPDRKNYKVEMKNNKIILLDKVEDPNLKKRIENFKFFGQYANFKDLENY
  USA300_FPR3757  YFVKKFYEKDKLPDRKNYKVEMKNNKIILLDKVEDPNLKKRIENFKFFGQYANFKDLENY
                  ***..:*::.: .  ***:**************** :**:************:**.*:.*
  
  COL             NNGDVSINWNVPSYDVEYKMSNKDENVKQLRSRYNIPTDKAPMLKMHIDGDLKGSSVGYK
  N315            NHGDVSINSNVPSYDAKFKMSNKDENVKQLRSRYNIPTDKAPILKMHIDGDLKGSSVGYK
  Newman          NNGDVSINWNVPSYDVEYKMSNKDENVKQLRSRYNIPTDKAPMLKMHIDGDLKGSSVGYK
  USA300_FPR3757  NNGDVSINWNVPSYDVEYKMSNKDENVKQLRSRYNIPTEKAPMLKMHIDGDLKGSSVGYK
                  *:****** ******.::********************:***:*****************
  
  COL             RLEIDFSK-EGRDISVIDYLSYKPAKK----
  N315            KLEIDFSKEENSELSIVDSLNFQPAKNKDDE
  Newman          RLEIDFSK-EGRDISVIDYLSYKPAKK----
  USA300_FPR3757  RLEIDFSK-EGRDISVIDYLSYKPAKK----
                  :******* *. ::*::* *.::***: