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⊟Summary[edit | edit source]
- pan ID?: SAUPAN002219000
- symbol?: holB
- synonym:
- description?: DNA polymerase III subunit delta'
- DNA polymerase III subunit delta'
- DNA-directed DNA polymerase III delta prime subunit
- DNA polymerase III delta subunit
- DNA-directed DNA polymerase
- DNA-directed DNA polymerase III delta' subunit
- DNA-directed DNA polymerase III subunit delta'
- DNA polymerase III, delta prime subunit, putative
- DNA polymerase III delta prime subunit
- DNA polymerase III subunits gamma and tau domain III family protein
- putative DNA polymerase III, delta' subunit
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 2731906..2732832
- synteny block?: BlockID0015180
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_0459 (holB)
08BA02176:
C248_0538 (holB)
11819-97:
MS7_0461
6850:
RSAU_000421 (holB)
71193:
ST398NM01_0550
ECT-R 2:
ECTR2_424
ED133:
SAOV_0505
ED98:
SAAV_0430
HO 5096 0412:
SAEMRSA15_04100 (holB)
JH1:
SaurJH1_0518
JH9:
SaurJH9_0505
JKD6008:
SAA6008_00488 (holB)
JKD6159:
SAA6159_00435 (holB)
LGA251:
SARLGA251_04180 (holB)
M013:
M013TW_0453
MRSA252:
SAR0485 (holB)
MSHR1132:
SAMSHR1132_04280
MSSA476:
SAS0441
Mu3:
SAHV_0481 (holB)
Mu50:
SAV0484 (holB)
MW2:
MW0439 (holB)
RF122:
SAB0433 (holB)
ST398:
SAPIG0550
T0131:
SAT0131_00528 (ribB)
TCH60:
HMPREF0772_10037 (holB)
TW20:
SATW20_05520 (holB)
USA300_TCH1516:
USA300HOU_0483 (holB)
VC40:
SAVC_02005
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MDEQQQLTNAYHSNKLSHAYLFEGDDAQTMKQVAINFAKLILCQTDSQCETKVSTYNHPD
N315 MDEQQQLTNAYHSNKLSHAYLFEGDDAQTMKQVAINFAKLILCQTDSQCETKVSTYNHPD
NCTC8325 -----------------------------MKQVAINFAKLILCQTDSQCETKVSTYNHPD
Newman MDEQQQLTNAYHSNKLSHAYLFEGDDAQTMKQVAINFAKLILCQTDSQCETKVSTYNHPD
USA300_FPR3757 MDEQQQLTNAYHSNKLSHAYLFEGDDAQTMKQVAINFAKLILCQTDSQCETKVSTYNHPD
*******************************
COL FMYISTTENAIKKEQVEQLVRHMNQLPIESTNKVYIIEDFEKLTVQGENSILKFLEEPPD
N315 FMYISTTENAIKKEQVEQLVRHMNQLPIESTNKVYIIEDFEKLTVQGENSILKFLEEPPD
NCTC8325 FMYISTTENAIKKEQVEQLVRHMNQLPIESTNKVYIIEDFEKLTVQGENSILKFLEEPPD
Newman FMYISTTENAIKKEQVEQLVRHMNQLPIESTNKVYIIEDFEKLTVQGENSILKFLEEPPD
USA300_FPR3757 FMYISTTENAIKKEQVEQLVRHMNQLPIESTNKVYIIEDFEKLTVQGENSILKFLEEPPD
************************************************************
COL NTIAILLSTKPEQILDTIHSRCQHVYFKPIDKEKFINRLVEQNMSKPVAEMISTYTTQID
N315 NTIAILLSTKPEQILDTIHSRCQHVYFKPIDKEKFINRLVEQNMSKPVAEMISTYTTQID
NCTC8325 NTIAILLSTKPEQILDTIHSRCQHVYFKPIDKEKFINRLVEQNMSKPVAEMISTYTTQID
Newman NTIAILLSTKPEQILDTIHSRCQHVYFKPIDKEKFINRLVEQNMSKPVAEMISTYTTQID
USA300_FPR3757 NTIAILLSTKPEQILDTIHSRCQHVYFKPIDKEKFINRLVEQNMSKPVAEMISTYTTQID
************************************************************
COL NAMALNEEFDLLALRKSVIRWCELLLTNKPMALIGIIDLLKQAKNKKLQSLTIAAVNGFF
N315 NAIALNEEFDLLALRKSVIRWCELLLTNKPMALIGIIDLLKQAKNKKLQSLTIAAVNGFF
NCTC8325 NAMALNEEFDLLALRKSVIRWCELLLTNKPMALIGIIDLLKQAKNKKLQSLTIAAVNGFF
Newman NAMALNEEFDLLALRKSVIRWCELLLTNKPMALIGIIDLLKQAKNKKLQSLTIAAVNGFF
USA300_FPR3757 NAMALNEEFDLLALRKSVIRWCELLLTNKPMALIGIIDLLKQAKNKKLQSLTIAAVNGFF
**:*********************************************************
COL EDIIHTKVNVEDKQIYSDLKNDIDQYAQKLSFNQLILMFDQLTEAHKKLNQNVNPTLVFE
N315 EDIIHTKVNVEDKQIYSDLKNDIDQYAQKLSFNQLFLMFDQLTEAHKKLNQNVNPTLVFE
NCTC8325 EDIIHTKVNVEDKQIYSDLKNDIDQYAQKLSFNQLILMFDQLTEAHKKLNQNVNPTLVFE
Newman EDIIHTKVNVEDKQIYSDLKNDIDQYAQKLSFNQLILMFDQLTEAHKKLNQNVNPTLVFE
USA300_FPR3757 EDIIHTKVNVEDKQIYSDLKNDIDQYAQKLSFNQLILMFDQLTEAHKKLNQNVNPTLVFE
***********************************:************************
COL QIVIKGVS
N315 QIVIKGVS
NCTC8325 QIVIKGVS
Newman QIVIKGVS
USA300_FPR3757 QIVIKGVS
********