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Summary[edit source | edit]

  • pan ID?: SAUPAN002228000
  • symbol?:
  • description?: deoxyribonuclease

      descriptions from strain specific annotations:

    • deoxyribonuclease
    • TatD family hydrolase
    • Putative deoxyribonuclease YcfH
    • TatD family deoxyribonuclease
    • TatD related DNase
    • putative TatD related DNase
    • Mg-dependent DNase
    • Hydrolase, TatD family
    • metallo-dependent hydrolase
    • TatD family Dnase
    • sec-independent hydrolase
  • strand?: +
  • coordinates?: 2738393..2739166
  • synteny block?: BlockID0015270
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_0466 (ycfH)
    08BA02176:
    C248_0546
    11819-97:
    MS7_0468
    71193:
    ST398NM01_0557
    ECT-R 2:
    ECTR2_431
    ED133:
    SAOV_0513
    ED98:
    SAAV_0438
    HO 5096 0412:
    SAEMRSA15_04170
    JH1:
    SaurJH1_0525
    JH9:
    SaurJH9_0512
    JKD6008:
    SAA6008_00495 (tatP)
    JKD6159:
    SAA6159_00442 (tatP)
    LGA251:
    SARLGA251_04250
    M013:
    M013TW_0460
    MRSA252:
    SAR0492
    MSHR1132:
    SAMSHR1132_04350
    MSSA476:
    SAS0448
    Mu3:
    SAHV_0488
    Mu50:
    SAV0491
    MW2:
    MW0446
    RF122:
    SAB0440
    ST398:
    SAPIG0557
    T0131:
    SAT0131_00536
    TCH60:
    HMPREF0772_10029
    TW20:
    SATW20_05590
    USA300_TCH1516:
    USA300HOU_0491
    VC40:
    SAVC_02040

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MLIDTHVHLNDEQYDDDLSEVITRAREAGVDRMFVVGFNKSTIERAMKLIDEYDFLYGII
    N315            MLIDTHVHLNDEQYDDDLSEVITRAREAGVDRMFVVGFNKSTIERAMKLIDEYDFLYGII
    NCTC8325        MLIDTHVHLNDEQYDDDLSEVITRAREAGVDRMFVVGFNKSTIERAMKLIDEYDFLYGII
    Newman          MLIDTHVHLNDEQYDDDLSEVITRAREAGVDRMFVVGFNKSTIERAMKLIDEYDFLYGII
    USA300_FPR3757  MLIDTHVHLNDEQYDDDLSEVITRAREAGVDRMFVVGFNKSTIERAMKLIDEYDFLYGII
                    ************************************************************

    COL             GWHPVDAIDFTEEHLEWIESLAQHPKVIGIGEMGLDYHWDKSPADVQKEVFRKQIALAKR
    N315            GWHPVDAIDFTEEHLEWIESLAQHPKVIGIGEMGLDYHWDKSPADVQKEVFRKQIALAKR
    NCTC8325        GWHPVDAIDFTEEHLEWIESLAQHPKVIGIGEMGLDYHWDKSPADVQKEVFRKQIALAKR
    Newman          GWHPVDAIDFTEEHLEWIESLAQHPKVIGIGEMGLDYHWDKSPADVQKEVFRKQIALAKR
    USA300_FPR3757  GWHPVDAIDFTEEHLEWIESLAQHPKVIGIGEMGLDYHWDKSPADVQKEVFRKQIALAKR
                    ************************************************************

    COL             LKLPIIIHNREATQDCIDILLEEHAEEVGGIMHSFSGSPEIADIVTNKLNFYISLGGPVT
    N315            LKLPIIIHNREATQDCIDILLEEHAEEVGGIMHSFSGSPEIADIVTNKLNFYISLGGPVT
    NCTC8325        LKLPIIIHNREATQDCIDILLEEHAEEVGGIMHSFSGSPEIADIVTNKLNFYISLGGPVT
    Newman          LKLPIIIHNREATQDCIDILLEEHAEEVGGIMHSFSGSPEIADIVTNKLNFYISLGGPVT
    USA300_FPR3757  LKLPIIIHNREATQDCIDILLEEHAEEVGGIMHSFSGSPEIADIVTNKLNFYISLGGPVT
                    ************************************************************

    COL             FKNAKQPKEVAKHVSMERLLVETDAPYLSPHPYRGKRNEPARVTLVAEQIAELKGLSYEE
    N315            FKNAKQPKEVAKHVSMERLLVETDAPYLSPHPYRGKRNEPARVTLVAEQIAELKGLSYEE
    NCTC8325        FKNAKQPKEVAKHVSMERLLVETDAPYLSPHPYRGKRNEPARVTLVAEQIAELKGLSYEE
    Newman          FKNAKQPKEVAKHVSMERLLVETDAPYLSPHPYRGKRNEPARVTLVAEQIAELKGLSYEE
    USA300_FPR3757  FKNAKQPKEVAKHVSMERLLVETDAPYLSPHPYRGKRNEPARVTLVAEQIAELKGLSYEE
                    ************************************************************

    COL             VCEQTTKNAEKLFNLNS
    N315            VCEQTTKNAEKLFNLNS
    NCTC8325        VCEQTTKNAEKLFNLNS
    Newman          VCEQTTKNAEKLFNLNS
    USA300_FPR3757  VCEQTTKNAEKLFNLNS
                    *****************