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⊟Summary[edit | edit source]
- pan ID?: SAUPAN002298000
- symbol?: cysS
- synonym:
- description?: cysteinyl-tRNA synthetase
- cysteinyl-tRNA synthetase
- cysteine--tRNA ligase
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 2819187..2820617
- synteny block?: BlockID0015970
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_0505 (cysS)
08BA02176:
C248_0603 (cysS)
11819-97:
MS7_0519 (cysS)
6850:
RSAU_000481 (cysS)
71193:
ST398NM01_0605
ECT-R 2:
ECTR2_483 (cysS)
ED133:
SAOV_0565 (cysS)
ED98:
SAAV_0491 (cysS)
HO 5096 0412:
SAEMRSA15_04560 (cysS)
JH1:
SaurJH1_0566 (cysS)
JH9:
SaurJH9_0552 (cysS)
JKD6008:
SAA6008_00536 (cysS)
JKD6159:
SAA6159_00483 (cysS)
LGA251:
SARLGA251_04650 (cysS)
M013:
M013TW_0514
MRSA252:
SAR0533 (cysS)
MSHR1132:
SAMSHR1132_04740
MSSA476:
SAS0487 (cysS)
Mu3:
SAHV_0527 (cysS)
Mu50:
SAV0530 (cysS)
MW2:
MW0485 (cysS)
RF122:
SAB0480 (cysS)
ST398:
SAPIG0605 (cysS)
T0131:
SAT0131_00582
TCH60:
HMPREF0772_12660 (cysS)
TW20:
SATW20_05990 (cysS)
USA300_TCH1516:
USA300HOU_0523 (cysS)
VC40:
SAVC_02235 (cysS)
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MITLYNTLTRQKEVFKPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEYQGYN
N315 MITLYNTLTRQKEVFKPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEYQGYN
NCTC8325 MITLYNTLTRQKEVFKPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEYQGYN
Newman MITLYNTLTRQKEVFKPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEYQGYN
USA300_FPR3757 MITLYNTLTRQKEVFKPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEYQGYN
************************************************************
COL VEYVSNFTDVDDKLIKRSQELNQSVPEIAEKYIAAFHEDVGALNVRKATSNPRVMDHMDD
N315 VEYVSNFTDVDDKLIKRSQELNQSVPEIAEKYIAAFHEDVGALNVRKATSNPRVMDHMDD
NCTC8325 VEYVSNFTDVDDKLIKRSQELNQSVPEIAEKYIAAFHEDVGALNVRKATSNPRVMDHMDD
Newman VEYVSNFTDVDDKLIKRSQELNQSVPEIAEKYIAAFHEDVGALNVRKATSNPRVMDHMDD
USA300_FPR3757 VEYVSNFTDVDDKLIKRSQELNQSVPEIAEKYIAAFHEDVGALNVRKATSNPRVMDHMDD
************************************************************
COL IIQFIKDLVDQGYAYESGGDVYFRTRKFEGYGKLSHQSIDDLKVGARIDAGEHKEDALDF
N315 IIQFIKDLVDQGYAYESGGDVYFRTRKFEGYGKLSHQSIDDLKVGARIDAGEHKEDALDF
NCTC8325 IIQFIKDLVDQGYAYESGGDVYFRTRKFEGYGKLSHQSIDDLKVGARIDAGEHKEDALDF
Newman IIQFIKDLVDQGYAYESGGDVYFRTRKFEGYGKLSHQSIDDLKVGARIDAGEHKEDALDF
USA300_FPR3757 IIQFIKDLVDQGYAYESGGDVYFRTRKFEGYGKLSHQSIDDLKVGARIDAGEHKEDALDF
************************************************************
COL TLWKKAKPGEISWDSPFGEGRPGWHIECSVMAFHELGPTIDIHAGGSDLQFPHHENEIAQ
N315 TLWKKAKPGEISWNSPFGEGRPGWHIECSVMAFHELGPTIDIHAGGSDLQFPHHENEIAQ
NCTC8325 TLWKKAKPGEISWDSPFGEGRPGWHIECSVMAFHELGPTIDIHAGGSDLQFPHHENEIAQ
Newman TLWKKAKPGEISWDSPFGEGRPGWHIECSVMAFHELGPTIDIHAGGSDLQFPHHENEIAQ
USA300_FPR3757 TLWKKAKPGEISWDSPFGEGRPGWHIECSVMAFHELGPTIDIHAGGSDLQFPHHENEIAQ
*************:**********************************************
COL SEAHNHAPFANYWMHNGFINIDNEKMSKSLGNFILVHDIIKEVDPDVLRFFMISVHYRSP
N315 SEAHNHAPFANYWMHNGFINIDNEKMSKSLGNFILVHDIIKEVDPDVLRFFMISVHYRSP
NCTC8325 SEAHNHAPFANYWMHNGFINIDNEKMSKSLGNFILVHDIIKEVDPDVLRFFMISVHYRSP
Newman SEAHNHAPFANYWMHNGFINIDNEKMSKSLGNFILVHDIIKEVDPDVLRFFMISVHYRSP
USA300_FPR3757 SEAHNHAPFANYWMHNGFINIDNEKMSKSLGNFILVHDIIKEVDPDVLRFFMISVHYRSP
************************************************************
COL INYNLELVESARSGLERIRNSYQLIEERAQIATNIENQQTYIDQIDAILNRFETVMNDDF
N315 INYNLELVESARSGLERIRNSYQLIEERAQIATNIENQQTYIDQIDAILNRFETVMNDDF
NCTC8325 INYNLELVESARSGLERIRNSYQLIEERAQIATNIENQQTYIDQIDAILNRFETVMNDDF
Newman INYNLELVESARSGLERIRNSYQLIEERAQIATNIENQQTYIDQIDAILNRFETVMNDDF
USA300_FPR3757 INYNLELVESARSGLERIRNSYQLIEERAQIATNIENQQTYIDQIDAILNRFETVMNDDF
************************************************************
COL NTANAITAWYDLAKLANKYVLENTTSTEVIDKFKAVYQIFSDVLGVPLKSKNADELLDED
N315 NTANAITAWYDLAKLANKYVLENTTSTEVIDKFKAVYQIFSDVLGVPLKSKNADELLDED
NCTC8325 NTANAITAWYDLAKLANKYVLENTTSTEVIDKFKAVYQIFSDVLGVPLKSKNADELLDED
Newman NTANAITAWYDLAKLANKYVLENTTSTEVIDKFKAVYQIFSDVLGVPLKSKNADELLDED
USA300_FPR3757 NTANAITAWYDLAKLANKYVLENTTSTEVIDKFKAVYQIFSDVLGVPLKSKNADELLDED
************************************************************
COL VEKLIEERNEARKNKDFARADEIRDMLKSQNIILEDTPQGVRFKRG
N315 VEKLIEERNEARKNKDFARADEIRDMLKSQNIILEDTPQGVRFKRG
NCTC8325 VEKLIEERNEARKNKDFARADEIRDMLKSQNIILEDTPQGVRFKRG
Newman VEKLIEERNEARKNKDFARADEIRDMLKSQNIILEDTPQGVRFKRG
USA300_FPR3757 VEKLIEERNEARKNKDFARADEIRDMLKSQNIILEDTPQGVRFKRG
**********************************************