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Summary[edit source | edit]

  • pan ID?: SAUPAN002298000
  • symbol?: cysS
  • description?: cysteinyl-tRNA synthetase

      descriptions from strain specific annotations:

    • cysteinyl-tRNA synthetase
    • cysteine--tRNA ligase
  • strand?: +
  • coordinates?: 2819187..2820617
  • synteny block?: BlockID0015970
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL0576 (cysS)
    N315:
    SA0488 (cysS)
    NCTC8325:
    Newman:
    NWMN_0492 (cysS)
    USA300_FPR3757:
    04-02981:
    SA2981_0505 (cysS)
    08BA02176:
    C248_0603 (cysS)
    11819-97:
    MS7_0519 (cysS)
    71193:
    ST398NM01_0605
    ECT-R 2:
    ECTR2_483 (cysS)
    ED133:
    SAOV_0565 (cysS)
    ED98:
    SAAV_0491 (cysS)
    HO 5096 0412:
    SAEMRSA15_04560 (cysS)
    JH1:
    SaurJH1_0566 (cysS)
    JH9:
    SaurJH9_0552 (cysS)
    JKD6008:
    SAA6008_00536 (cysS)
    JKD6159:
    SAA6159_00483 (cysS)
    LGA251:
    SARLGA251_04650 (cysS)
    M013:
    M013TW_0514
    MRSA252:
    SAR0533 (cysS)
    MSHR1132:
    SAMSHR1132_04740
    MSSA476:
    SAS0487 (cysS)
    Mu3:
    SAHV_0527 (cysS)
    Mu50:
    SAV0530 (cysS)
    MW2:
    MW0485 (cysS)
    RF122:
    SAB0480 (cysS)
    ST398:
    SAPIG0605 (cysS)
    T0131:
    SAT0131_00582
    TCH60:
    HMPREF0772_12660 (cysS)
    TW20:
    SATW20_05990 (cysS)
    USA300_TCH1516:
    USA300HOU_0523 (cysS)
    VC40:
    SAVC_02235 (cysS)

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MITLYNTLTRQKEVFKPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEYQGYN
    N315            MITLYNTLTRQKEVFKPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEYQGYN
    NCTC8325        MITLYNTLTRQKEVFKPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEYQGYN
    Newman          MITLYNTLTRQKEVFKPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEYQGYN
    USA300_FPR3757  MITLYNTLTRQKEVFKPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEYQGYN
                    ************************************************************

    COL             VEYVSNFTDVDDKLIKRSQELNQSVPEIAEKYIAAFHEDVGALNVRKATSNPRVMDHMDD
    N315            VEYVSNFTDVDDKLIKRSQELNQSVPEIAEKYIAAFHEDVGALNVRKATSNPRVMDHMDD
    NCTC8325        VEYVSNFTDVDDKLIKRSQELNQSVPEIAEKYIAAFHEDVGALNVRKATSNPRVMDHMDD
    Newman          VEYVSNFTDVDDKLIKRSQELNQSVPEIAEKYIAAFHEDVGALNVRKATSNPRVMDHMDD
    USA300_FPR3757  VEYVSNFTDVDDKLIKRSQELNQSVPEIAEKYIAAFHEDVGALNVRKATSNPRVMDHMDD
                    ************************************************************

    COL             IIQFIKDLVDQGYAYESGGDVYFRTRKFEGYGKLSHQSIDDLKVGARIDAGEHKEDALDF
    N315            IIQFIKDLVDQGYAYESGGDVYFRTRKFEGYGKLSHQSIDDLKVGARIDAGEHKEDALDF
    NCTC8325        IIQFIKDLVDQGYAYESGGDVYFRTRKFEGYGKLSHQSIDDLKVGARIDAGEHKEDALDF
    Newman          IIQFIKDLVDQGYAYESGGDVYFRTRKFEGYGKLSHQSIDDLKVGARIDAGEHKEDALDF
    USA300_FPR3757  IIQFIKDLVDQGYAYESGGDVYFRTRKFEGYGKLSHQSIDDLKVGARIDAGEHKEDALDF
                    ************************************************************

    COL             TLWKKAKPGEISWDSPFGEGRPGWHIECSVMAFHELGPTIDIHAGGSDLQFPHHENEIAQ
    N315            TLWKKAKPGEISWNSPFGEGRPGWHIECSVMAFHELGPTIDIHAGGSDLQFPHHENEIAQ
    NCTC8325        TLWKKAKPGEISWDSPFGEGRPGWHIECSVMAFHELGPTIDIHAGGSDLQFPHHENEIAQ
    Newman          TLWKKAKPGEISWDSPFGEGRPGWHIECSVMAFHELGPTIDIHAGGSDLQFPHHENEIAQ
    USA300_FPR3757  TLWKKAKPGEISWDSPFGEGRPGWHIECSVMAFHELGPTIDIHAGGSDLQFPHHENEIAQ
                    *************:**********************************************

    COL             SEAHNHAPFANYWMHNGFINIDNEKMSKSLGNFILVHDIIKEVDPDVLRFFMISVHYRSP
    N315            SEAHNHAPFANYWMHNGFINIDNEKMSKSLGNFILVHDIIKEVDPDVLRFFMISVHYRSP
    NCTC8325        SEAHNHAPFANYWMHNGFINIDNEKMSKSLGNFILVHDIIKEVDPDVLRFFMISVHYRSP
    Newman          SEAHNHAPFANYWMHNGFINIDNEKMSKSLGNFILVHDIIKEVDPDVLRFFMISVHYRSP
    USA300_FPR3757  SEAHNHAPFANYWMHNGFINIDNEKMSKSLGNFILVHDIIKEVDPDVLRFFMISVHYRSP
                    ************************************************************

    COL             INYNLELVESARSGLERIRNSYQLIEERAQIATNIENQQTYIDQIDAILNRFETVMNDDF
    N315            INYNLELVESARSGLERIRNSYQLIEERAQIATNIENQQTYIDQIDAILNRFETVMNDDF
    NCTC8325        INYNLELVESARSGLERIRNSYQLIEERAQIATNIENQQTYIDQIDAILNRFETVMNDDF
    Newman          INYNLELVESARSGLERIRNSYQLIEERAQIATNIENQQTYIDQIDAILNRFETVMNDDF
    USA300_FPR3757  INYNLELVESARSGLERIRNSYQLIEERAQIATNIENQQTYIDQIDAILNRFETVMNDDF
                    ************************************************************

    COL             NTANAITAWYDLAKLANKYVLENTTSTEVIDKFKAVYQIFSDVLGVPLKSKNADELLDED
    N315            NTANAITAWYDLAKLANKYVLENTTSTEVIDKFKAVYQIFSDVLGVPLKSKNADELLDED
    NCTC8325        NTANAITAWYDLAKLANKYVLENTTSTEVIDKFKAVYQIFSDVLGVPLKSKNADELLDED
    Newman          NTANAITAWYDLAKLANKYVLENTTSTEVIDKFKAVYQIFSDVLGVPLKSKNADELLDED
    USA300_FPR3757  NTANAITAWYDLAKLANKYVLENTTSTEVIDKFKAVYQIFSDVLGVPLKSKNADELLDED
                    ************************************************************

    COL             VEKLIEERNEARKNKDFARADEIRDMLKSQNIILEDTPQGVRFKRG
    N315            VEKLIEERNEARKNKDFARADEIRDMLKSQNIILEDTPQGVRFKRG
    NCTC8325        VEKLIEERNEARKNKDFARADEIRDMLKSQNIILEDTPQGVRFKRG
    Newman          VEKLIEERNEARKNKDFARADEIRDMLKSQNIILEDTPQGVRFKRG
    USA300_FPR3757  VEKLIEERNEARKNKDFARADEIRDMLKSQNIILEDTPQGVRFKRG
                    **********************************************