From AureoWiki
Jump to: navigation, search

Summary[edit source | edit]

  • pan ID?: SAUPAN002372000
  • symbol?: mvaD
  • description?: mevalonate diphosphate decarboxylase

      descriptions from strain specific annotations:

    • mevalonate diphosphate decarboxylase
    • diphosphomevalonate decarboxylase
  • strand?: +
  • coordinates?: 2910235..2911218
  • synteny block?: BlockID0016710
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL0637 (mvaD)
    N315:
    SA0548 (mvaD)
    NCTC8325:
    Newman:
    NWMN_0554 (mvaD)
    USA300_FPR3757:
    04-02981:
    SA2981_0568 (mvaD)
    08BA02176:
    C248_0666 (mvaD)
    11819-97:
    MS7_0580 (mvaD)
    71193:
    ST398NM01_0665
    ECT-R 2:
    ECTR2_544 (mvaD)
    ED133:
    SAOV_0625
    ED98:
    SAAV_0553 (mvaD)
    HO 5096 0412:
    SAEMRSA15_05190 (mvaD)
    JH1:
    SaurJH1_0629
    JH9:
    SaurJH9_0614
    JKD6008:
    SAA6008_00598 (mvaD)
    JKD6159:
    SAA6159_00544 (mvaD)
    LGA251:
    SARLGA251_05260 (mvaD)
    M013:
    M013TW_0579
    MRSA252:
    SAR0597 (mvaD)
    MSHR1132:
    SAMSHR1132_05350
    MSSA476:
    SAS0550
    Mu3:
    SAHV_0589 (mvaD)
    Mu50:
    SAV0591 (mvaD)
    MW2:
    MW0546 (mvaD)
    RF122:
    SAB0541 (mvaD)
    ST398:
    SAPIG0665 (mvaD)
    T0131:
    SAT0131_00654
    TCH60:
    HMPREF0772_12597 (mvaD)
    TW20:
    SATW20_06600 (mvaD)
    USA300_TCH1516:
    USA300HOU_0584 (mvaD)
    VC40:
    SAVC_02540

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MIKSGKARAHTNIALIKYWGKKDEALIIPMNNSISVTLEKFYTETKVTFNDQLTQDQFWL
    N315            MIKSGKARAHTNIALIKYWGKKDEALIIPMNNSISVTLEKFYTETKVTFNDQLTQDQFWL
    NCTC8325        MIKSGKARAHTNIALIKYWGKKDEALIIPMNNSISVTLEKFYTETKVTFNDQLTQDQFWL
    Newman          MIKSGKARAHTNIALIKYWGKKDEALIIPMNNSISVTLEKFYTETKVTFNDQLTQDQFWL
    USA300_FPR3757  MIKSGKARAHTNIALIKYWGKKDEALIIPMNNSISVTLEKFYTETKVTFNDQLTQDQFWL
                    ************************************************************

    COL             NGEKVSGKELEKISKYMDIVRNRAGIDWYAEIESDNFVPTAAGLASSASAYAALAAACNQ
    N315            NGEKVSGKELEKISKYMDIVRNRAGIDWYAEIESDNFVPTAAGLASSASAYAALAAACNQ
    NCTC8325        NGEKVSGKELEKISKYMDIVRNRAGIDWYAEIESDNFVPTAAGLASSASAYAALAAACNQ
    Newman          NGEKVSGKELEKISKYMDIVRNRAGIDWYAEIESDNFVPTAAGLASSASAYAALAAACNQ
    USA300_FPR3757  NGEKVSGKELEKISKYMDIVRNRAGIDWYAEIESDNFVPTAAGLASSASAYAALAAACNQ
                    ************************************************************

    COL             ALDMQLSDKDLSRLARIGSGSASRSIYGGFAEWEKGYSDETSYAVPLESNHFEDDLAMIF
    N315            ALDLQLSDKDLSRLARIGSGSASRSIYGGFAEWEKGYNDETSYAVPLESNHFEDDLAMIF
    NCTC8325        ALDMQLSDKDLSRLARIGSGSASRSIYGGFAEWEKGYSDETSYAVPLESNHFEDDLAMIF
    Newman          ALDMQLSDKDLSRLARIGSGSASRSIYGGFAEWEKGYSDETSYAVPLESNHFEDDLAMIF
    USA300_FPR3757  ALDMQLSDKDLSRLARIGSGSASRSIYGGFAEWEKGYSDETSYAVPLESNHFEDDLAMIF
                    ***:*********************************.**********************

    COL             VVINQHSKKVPSRYGMSLTRNTSRFYQYWLDHIDEDLAEAKAAIQDKDFKRLGEVIEENG
    N315            VVINQHSKKVPSRYGMSLTRNTSRFYQYWLDHIDEDLAEAKAAIQDKDFKRLGEVIEENG
    NCTC8325        VVINQHSKKVPSRYGMSLTRNTSRFYQYWLDHIDEDLAEAKAAIQDKDFKRLGEVIEENG
    Newman          VVINQHSKKVPSRYGMSLTRNTSRFYQYWLDHIDEDLAEAKAAIQDKDFKRLGEVIEENG
    USA300_FPR3757  VVINQHSKKVPSRYGMSLTRNTSRFYQYWLDHIDEDLAEAKAAIQDKDFKRLGEVIEENG
                    ************************************************************

    COL             LRMHATNLGSTPPFTYLVQESYDVMALVHECREAGYPCYFTMDAGPNVKILVEKKNKQQI
    N315            LRMHATNLGSTPPFTYLVQESYDVMALVHECREAGYPCYFTMDAGPNVKILVEKKNKQQI
    NCTC8325        LRMHATNLGSTPPFTYLVQESYDVMALVHECREAGYPCYFTMDAGPNVKILVEKKNKQQI
    Newman          LRMHATNLGSTPPFTYLVQESYDVMALVHECREAGYPCYFTMDAGPNVKILVEKKNKQQI
    USA300_FPR3757  LRMHATNLGSTPPFTYLVQESYDVMALVHECREAGYPCYFTMDAGPNVKILVEKKNKQQI
                    ************************************************************

    COL             IDKLLTQFDNNQIIDSDIIATGIEIIE
    N315            IDKLLTQFDNNQIIDSDIIATGIEIIE
    NCTC8325        IDKLLTQFDNNQIIDSDIIATGIEIIE
    Newman          IDKLLTQFDNNQIIDSDIIATGIEIIE
    USA300_FPR3757  IDKLLTQFDNNQIIDSDIIATGIEIIE
                    ***************************