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Summary[edit source | edit]

  • pan ID?: SAUPAN002374000
  • symbol?:
  • description?: ywzC
  • strand?: +
  • coordinates?: 2912472..2912825
  • synteny block?: BlockID0016730
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_0570
    08BA02176:
    C248_0668
    11819-97:
    MS7_0582
    71193:
    ST398NM01_0667
    ECT-R 2:
    ECTR2_546
    ED133:
    SAOV_0627
    ED98:
    SAAV_0555
    HO 5096 0412:
    SAEMRSA15_05210
    JH1:
    SaurJH1_0631
    JH9:
    SaurJH9_0616
    JKD6008:
    SAA6008_00600
    JKD6159:
    SAA6159_00546
    LGA251:
    SARLGA251_05280
    M013:
    M013TW_0581
    MRSA252:
    SAR0599
    MSHR1132:
    SAMSHR1132_05370
    MSSA476:
    SAS0552
    Mu3:
    SAHV_0591
    Mu50:
    SAV0593
    MW2:
    MW0548
    RF122:
    SAB0543
    ST398:
    SAPIG0667
    T0131:
    SAT0131_00656
    TCH60:
    HMPREF0772_12595 (ywzC)
    TW20:
    SATW20_06620
    USA300_TCH1516:
    USA300HOU_0586
    VC40:
    SAVC_02550

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             ----MKNTFLICDECQAVNIRTLQKKLEKLDPDAEIVIGCQSYCGPGRRKTFTFVNNRPL
    N315            ----MKNTFLICDECQAVNIRTLQKKLEKLDPDAEIVIGCQSYCGPGRRKTFTFVNNRPL
    NCTC8325        ----MKNTFLICDECQAVNIRTLQKKLEKLDPDAEIVIGCQSYCGPGRRKTFTFVNNRPL
    Newman          MGSNMKNTFLICDECQAVNIRTLQKKLEKLDPDAEIVIGCQSYCGPGRRKTFTFVNNRPL
    USA300_FPR3757  ----MKNTFLICDECQAVNIRTLQKKLEKLDPDAEIVIGCQSYCGPGRRKTFTFVNNRPL
                        ********************************************************

    COL             AALTEEELIEKVSQQLKKPRDPEEEERLRKRHEERKRRKEEQDRKLKEKLEKRKAQQ
    N315            AALTEEELIEKVSQQLKKPRDPEEEERLRKRHEERKRRKEEQDRKLKEKLEKRKAQQ
    NCTC8325        AALTEEELIEKVSQQLKKPRDPEEEERLRKRHEERKRRKEEQDRKLKEKLEKRKAQQ
    Newman          AALTEEELIEKVSQQLKKPRDPEEEERLRKRHEERKRRKEEQDRKLKEKLEKRKAQQ
    USA300_FPR3757  AALTEEELIEKVSQQLKKPRDPEEEERLRKRHEERKRRKVEQDRKLKEKLEKRKAQQ
                    *************************************** *****************