From AureoWiki
Jump to navigation Jump to search

Summary[edit | edit source]

  • pan ID?: SAUPAN002566000
  • symbol?:
  • synonym:
  • description?: hypothetical protein
  • strand?: -
  • coordinates?: 3076888..3077572
  • synteny block?: BlockID0018020
  • occurrence?: in 100% of 33 strains

Orthologs[edit | edit source]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_0659
    08BA02176:
    C248_0767
    11819-97:
    MS7_0734
    6850:
    RSAU_000658
    71193:
    ST398NM01_0760
    ECT-R 2:
    ECTR2_634
    ED133:
    SAOV_0717c
    ED98:
    SAAV_0645
    HO 5096 0412:
    SAEMRSA15_06080
    JH1:
    SaurJH1_0722
    JH9:
    SaurJH9_0706
    JKD6008:
    SAA6008_00699
    JKD6159:
    SAA6159_00637
    LGA251:
    SARLGA251_06150
    M013:
    M013TW_0669
    MRSA252:
    SAR0735
    MSHR1132:
    SAMSHR1132_06280
    MSSA476:
    SAS0647
    Mu3:
    SAHV_0679
    Mu50:
    SAV0682
    MW2:
    MW0644
    RF122:
    SAB0631c
    ST398:
    SAPIG0760
    T0131:
    SAT0131_00753 (fadB)
    TCH60:
    HMPREF0772_12505
    TW20:
    SATW20_07570
    USA300_TCH1516:
    USA300HOU_0705
    VC40:
    SAVC_03040

Genome Viewer[edit | edit source]

COL
N315
NCTC8325
Newman
USA300_FPR3757

Alignments[edit | edit source]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.307)


    COL             MDKKKVIKFMINVLPIVLVPLIVERKRIKQHPDVQKVTDATSKVASKTSAAISNTASDVK
    N315            MDKKKVIKFMINVLPIVLVPLIVERKRIKQHPDVQKVTDATSKVASKTSAAISNTASDVK
    NCTC8325        MDKKKVIKFMINVLPIVLVPLIVERKRIKQHPDVQKVTDATSKVASKTSAAISNTASDVK
    Newman          MDKKKVIKFMINVLPIVLVPLIVERKRIKQHPDVQKVTDATSKVASKTSAAISNTASDVK
    USA300_FPR3757  MDKKKVIKFMINVLPIVLVPLIVERKRIKQHPDVQKVTDATSKVASKTSAAISNTASDVK
                    ************************************************************

    COL             EYVGDKKQDFENKRELKKFAREHDPAYIEKKGEKLAKQNRKDADKMNKILQKNIEKRHKE
    N315            EYVGDKKQDFENKRELKKFAREHDPAYIEKKGEKLAKQNRKDADKMNKILQKNIEKRHKE
    NCTC8325        EYVGDKKQDFENKRELKKFAREHDPAYIEKKGEKLAKQNRKDADKMNKILQKNIEKRHKE
    Newman          EYVGDKKQDFENKRELKKFAREHDPAYIEKKGEKLAKQNRKDADKMNKILQKNIEKRHKE
    USA300_FPR3757  EYVGDKKQDFENKRELKKFAREHDPAYIEKKGEKLAKQNRKDADKMNKILQKNIEKRHKE
                    ************************************************************

    COL             EQKAREKNEIQRIKDMKKSQKYEEKAGLTPNKLDEKTEKKGDKLAEKNRKEIAKMNKKLQ
    N315            EQKAREKNEIQRIKDMKKSQKYEEKAGLTPNKLDEKTEKKGDKLAEKNRKEIAKMNKKLQ
    NCTC8325        EQKAREKNEIQRIKDMKKSQKYEEKAGLTPNKLDEKTEKKGDKLAEKNRKEIAKMNKKLQ
    Newman          EQKAREKNEIQRIKDMKKSQKYEEKAGLTPNKLDEKTEKKGDKLAEKNRKEIAKMNKKLQ
    USA300_FPR3757  EQKAREKNEIQRIKDMKKSQKYEEKAGLTPNKLDEKTEKKGDKLAEKNRKEIAKMNKKLQ
                    ************************************************************

    COL             KNIEKRHKEEQKRQQEADKARIKSFKKYKDYVAKSASQQNKENNTEA
    N315            KNIEKRHKEEQKRQQEADKARIKSFKKYKDYVAKSASQQNKENNTEA
    NCTC8325        KNIEKRHKEEQKRQQEADKARIKSFKKYKDYVAKSASQQNKENNTEA
    Newman          KNIEKRHKEEQKRQQEADKARIKSFKKYKDYVAKSASQQNKENNTEA
    USA300_FPR3757  KNIEKRHKEEQKRQQEADKARIKSFKKYKDYVAKSASQQNKENNTEA
                    ***********************************************