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Summary[edit source | edit]

  • pan ID?: SAUPAN002644000
  • symbol?:
  • description?: GrpB
  • strand?: -
  • coordinates?: 3143051..3143569
  • synteny block?: BlockID0018790
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_0717
    08BA02176:
    C248_0826
    11819-97:
    MS7_0789
    71193:
    ST398NM01_0815
    ECT-R 2:
    ECTR2_689
    ED133:
    SAOV_0776c
    ED98:
    SAAV_0701
    HO 5096 0412:
    SAEMRSA15_06650
    JH1:
    SaurJH1_0780
    JH9:
    SaurJH9_0763
    JKD6008:
    SAA6008_00753
    JKD6159:
    SAA6159_00694
    LGA251:
    SARLGA251_06720
    M013:
    M013TW_0724
    MRSA252:
    SAR0793
    MSHR1132:
    SAMSHR1132_06840
    MSSA476:
    SAS0704
    Mu3:
    SAHV_0736
    Mu50:
    SAV0739
    MW2:
    MW0701
    RF122:
    SAB0691c
    ST398:
    SAPIG0815
    T0131:
    SAT0131_00811
    TCH60:
    HMPREF0772_12444
    TW20:
    SATW20_08140
    USA300_TCH1516:
    USA300HOU_0766
    VC40:
    SAVC_03330

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MYSNVQPFINSDLTNCFQSQYTEIESLLFNLLDSPVKYTKHIGGTHHFKYSTEPILDILV
    N315            MYSNVQPFINSDLTNCFQSQYTEIESLLFNLLDSPVKYTKHIGGTHHFKYSTEPILDILV
    NCTC8325        MYSNVQPFINSDLTNCFQSQYTEIESLLFNLLDSPVKYTKHIGGTHHFKYSTEPILDILV
    Newman          MYSNVQPFINSDLTNCFQSQYTEIESLLFNLLDSPVKYTKHIGGTHHFKYSTEPILDILV
    USA300_FPR3757  MYSNVQPFINSDLTNCFQSQYTEIESLLFNLLDSPVKYTKHIGGTHHFKYSTEPILDILV
                    ************************************************************

    COL             GVENLHDITSLDEKRLNYVGFYRLHHKYTKKVMMAKFNNFHELKQQVRLHIIQMNTQTFE
    N315            GVENLHDITSLDEKRLNYVGFYRLHHKYTKKVMMAKFNNFHELKQQVRLHIIQMNTQTFE
    NCTC8325        GVENLHDITSLDEKRLNYVGFYRLHHKYTKKVMMAKFNNFHELKQQVRLHIIQMNTQTFE
    Newman          GVENLHDITSLDEKRLNYVGFYRLHHKYTKKVMMAKFNNFHELKQQVRLHIIQMNTQTFE
    USA300_FPR3757  GVENLHDITSLDEKRLNYVGFYRLHHKYTKKVMMAKFNNFHELKQQVRLHIIQMNTQTFE
                    ************************************************************

    COL             SYLALDYLLSTNDDIALQFNTKKHQILQHSLTIRQYEMQKQQYFEKLCKKYL
    N315            SYLALDYLLSTNDDIALQFNTKKHQILQHSLTIRQYEMQKQQYFEKLCKKYL
    NCTC8325        SYLALDYLLSTNDDIALQFNTKKHQILQHSLTIRQYEMQKQQYFEKLCKKYL
    Newman          SYLALDYLLSTNDDIALQFNTKKHQILQHSLTIRQYEMQKQQYFEKLCKKYL
    USA300_FPR3757  SYLALDYLLSTNDDIALQFNTKKHQILQHSLTIRQYEMQKQQYFEKLCKKYL
                    ****************************************************