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Summary[edit source | edit]

  • pan ID?: SAUPAN002706000
  • symbol?: gapA
  • description?: aldehyde dehydrogenase

      descriptions from strain specific annotations:

    • aldehyde dehydrogenase
    • glyceraldehyde 3-phosphate dehydrogenase
    • glyceraldehyde 3-phosphate dehydrogenase 1
    • glyceraldehyde-3-phosphate dehydrogenase, type I
    • NAD-dependent glyceraldehyde-3-phosphate dehydrogenase
    • glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)
  • strand?: +
  • coordinates?: 3194883..3195893
  • synteny block?: BlockID0019380
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL0838 (gapA1)
    N315:
    SA0727 (gap)
    NCTC8325:
    Newman:
    NWMN_0741 (gapA)
    USA300_FPR3757:
    04-02981:
    SA2981_0750 (gap)
    08BA02176:
    C248_0863 (gap1)
    11819-97:
    MS7_0823
    71193:
    ST398NM01_0851
    ECT-R 2:
    ECTR2_723 (gap)
    ED133:
    SAOV_0814
    ED98:
    SAAV_0738 (gapA1)
    HO 5096 0412:
    SAEMRSA15_06990 (gap1)
    JH1:
    SaurJH1_0813
    JH9:
    SaurJH9_0797
    JKD6008:
    SAA6008_00787 (gap)
    JKD6159:
    SAA6159_00729 (gap)
    LGA251:
    SARLGA251_07060 (gap1)
    M013:
    M013TW_0763
    MRSA252:
    SAR0828 (gap1)
    MSHR1132:
    SAMSHR1132_07180
    MSSA476:
    SAS0738
    Mu3:
    SAHV_0769 (gap)
    Mu50:
    SAV0772 (gap)
    MW2:
    MW0734 (gap)
    RF122:
    SAB0728 (gap)
    ST398:
    SAPIG0851 (gap)
    T0131:
    SAT0131_00844
    TCH60:
    HMPREF0772_12406 (gap2)
    TW20:
    SATW20_08470 (gap1)
    USA300_TCH1516:
    USA300HOU_0802 (gap)
    VC40:
    SAVC_03505

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MAVKVAINGFGRIGRLAFRRIQEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEV
    N315            MAVKVAINGFGRIGRLAFRRIQEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEV
    NCTC8325        MAVKVAINGFGRIGRLAFRRIQEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEV
    Newman          MAVKVAINGFGRIGRLAFRRIQEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEV
    USA300_FPR3757  MAVKVAINGFGRIGRLAFRRIQEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEV
                    ************************************************************

    COL             VDGGFRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLIS
    N315            VDGGFRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLIS
    NCTC8325        VDGGFRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLIS
    Newman          VDGGFRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLIS
    USA300_FPR3757  VDGGFRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLIS
                    ************************************************************

    COL             APATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMTTIHAY
    N315            APATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMTTIHAY
    NCTC8325        APATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMTTIHAY
    Newman          APATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMTTIHAY
    USA300_FPR3757  APATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMTTIHAY
                    ************************************************************

    COL             TGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVATG
    N315            TGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVATG
    NCTC8325        TGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVATG
    Newman          TGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVATG
    USA300_FPR3757  TGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVATG
                    ************************************************************

    COL             SLTELTVVLEKQDVTVEQVNEAMKNASNESFGYTEDEIVSSDVVGMTYGSLFDATQTRVM
    N315            SLTELTVVLEKQDVTVEQVNEAMKNASNESFGYTEDEIVSSDVVGMTYGSLFDATQTRVM
    NCTC8325        SLTELTVVLEKQDVTVEQVNEAMKNASNESFGYTEDEIVSSDVVGMTYGSLFDATQTRVM
    Newman          SLTELTVVLEKQDVTVEQVNEAMKNASNESFGYTEDEIVSSDVVGMTYGSLFDATQTRVM
    USA300_FPR3757  SLTELTVVLEKQDVTVEQVNEAMKNASNESFGYTEDEIVSSDVVGMTYGSLFDATQTRVM
                    ************************************************************

    COL             SVGDRQLVKVAAWYDNEMSYTAQLVRTLAYLAELSK
    N315            SVGDRQLVKVAAWYDNEMSYTAQLVRTLAYLAELSK
    NCTC8325        SVGDRQLVKVAAWYDNEMSYTAQLVRTLAYLAELSK
    Newman          SVGDRQLVKVAAWYDNEMSYTAQLVRTLAYLAELSK
    USA300_FPR3757  SVGDRQLVKVAAWYDNEMSYTAQLVRTLAYLAELSK
                    ************************************