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Summary[edit source | edit]

  • pan ID?: SAUPAN002711000
  • symbol?:
  • description?: membrane protein

      descriptions from strain specific annotations:

    • membrane protein
    • membrane spanning protein
  • strand?: +
  • coordinates?: 3201404..3201877
  • synteny block?: BlockID0019430
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_0755
    08BA02176:
    C248_0868
    11819-97:
    MS7_0828
    71193:
    ST398NM01_0856
    ECT-R 2:
    ECTR2_728
    ED133:
    SAOV_0819
    ED98:
    SAAV_0743
    HO 5096 0412:
    SAEMRSA15_07040
    JH1:
    SaurJH1_0818
    JH9:
    SaurJH9_0802
    JKD6008:
    SAA6008_00792
    JKD6159:
    SAA6159_00734
    LGA251:
    SARLGA251_07110
    M013:
    M013TW_0768
    MRSA252:
    SAR0833
    MSHR1132:
    SAMSHR1132_07230
    MSSA476:
    SAS0743
    Mu3:
    SAHV_0774
    Mu50:
    SAV0777
    MW2:
    MW0739
    RF122:
    SAB0733
    ST398:
    SAPIG0856
    T0131:
    SAT0131_00850
    TCH60:
    HMPREF0772_12401
    TW20:
    SATW20_08520
    USA300_TCH1516:
    USA300HOU_0807
    VC40:
    SAVC_03530

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MADRTNKEIKTGRFIATASIVFSILLIIHYFVSLDNATAKALLNLTNQNTSDKAIDYILN
    N315            MADRTNKEIKTGRFIATASIVFSILLIIHYFVSLDNATAKALLNLTNQNTSDKAIDYILN
    NCTC8325        MADRTNKEIKTGRFIATASIVFSILLIIHYFVSLDNATAKALLNLTNQNTSDKAIDYILN
    Newman          MADRTNKEIKTGRFIATASIVFSILLIIHYFVSLDNATAKALLNLTNQNTSDKAIDYILN
    USA300_FPR3757  MADRTNKEIKTGRFIATASIVFSILLIIHYFVSLDNATAKALLNLTNQNTSDKAIDYILN
                    ************************************************************

    COL             SFRFTGIMYILAYLAGFITFWNRHTYVWWFMFAVYVSNSLFTLINLSITIQAIKAAHGAY
    N315            SFRFTGIMYILAYLAGFITFWNRHTYVWWFMFAVYVSNSLFTLINLSITIQAIKAAHGAY
    NCTC8325        SFRFTGIMYILAYLAGFITFWNRHTYVWWFMFAVYVSNSLFTLINLSITIQAIKAAHGAY
    Newman          SFRFTGIMYILAYLAGFITFWNRHTYVWWFMFAVYVSNSLFTLINLSITIQAIKAAHGAY
    USA300_FPR3757  SFRFTGIMYILAYLAGFITFWNRHTYVWWFMFAVYVSNSLFTLINLSITIQAIKAAHGAY
                    ************************************************************

    COL             LTLPILIVIIGSVALAIYMLVVSIKRKSTFNR
    N315            LTLPILIVIIGSVALAIYMLVVSIKRKSTFNR
    NCTC8325        LTLPILIVIIGSVALAIYMLVVSIKRKSTFNR
    Newman          LTLPILIVIIGSVALAIYMLVVSIKRKSTFNR
    USA300_FPR3757  LTLPILIVIIGSVALAIYMLVVSIKRKSTFNR
                    ********************************