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Summary[edit source | edit]

  • pan ID?: SAUPAN002800000
  • symbol?: nuc
  • description?: nuclease

      descriptions from strain specific annotations:

    • nuclease
    • micrococcal nuclease
    • thermonuclease precursor
    • Staphylococcal nuclease
    • staphylococcal thermonuclease precursor
    • Thermonuclease
    • phage-encoded chromosome degrading nuclease YokF
    • thermonuclease (TNase) (Micrococcal nuclease)(Staphylococcal nuclease)
  • strand?: +
  • coordinates?: 3268873..3269562
  • synteny block?: BlockID0019910
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL0860 (nuc)
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_0770
    08BA02176:
    C248_0884 (nuc)
    11819-97:
    MS7_0843 (nuc)
    71193:
    ST398NM01_0871
    ECT-R 2:
    ECTR2_743
    ED133:
    SAOV_0832 (nuc)
    ED98:
    SAAV_0761 (nuc)
    HO 5096 0412:
    SAEMRSA15_07180 (nuc)
    JH1:
    SaurJH1_0832
    JH9:
    SaurJH9_0816
    JKD6008:
    SAA6008_00807
    JKD6159:
    SAA6159_00747
    LGA251:
    SARLGA251_07230 (nuc)
    M013:
    M013TW_0782
    MRSA252:
    SAR0847 (nuc)
    MSHR1132:
    SAMSHR1132_07400
    MSSA476:
    SAS0756
    Mu3:
    SAHV_0811 (nuc)
    Mu50:
    SAV0815 (nuc)
    MW2:
    MW0769
    RF122:
    SAB0748 (nuc)
    ST398:
    SAPIG0871
    T0131:
    SAT0131_00892 (int)
    TCH60:
    HMPREF0772_12387 (nuc)
    TW20:
    SATW20_08660 (nuc)
    USA300_TCH1516:
    USA300HOU_0823 (nuc)
    VC40:
    SAVC_03605

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MTEYLLSAGICMAIVSILLIGMAISNVSKGQYAKRFFYFATSCLVLTLVVVSSLSSSANA
    N315            MTEYLLSAGICMAIVSILLIGMAISNVSKGQYAKRFFFFATSCLVLTLVVVSSLSSSANA
    NCTC8325        MTEYLLSAGICMAIVSILLIGMAISNVSKGQYAKRFFYFATSCLVLTLVVVSSLSSSANA
    Newman          MTEYLLSAGICMAIVSILLIGMAISNVSKGQYAKRFFYFATSCLVLTLVVVSSLSSSANA
    USA300_FPR3757  MTEYLLSAGICMAIVSILLIGMAISNVSKGQYAKRFFYFATSCLVLTLVVVSSLSSSANA
                    *************************************:**********************

    COL             SQTDNGVNRSGSEDPTVYSATSTKKLHKEPATLIKAIDGDTVKLMYKGQPMTFRLLLVDT
    N315            SQTDNGVNRSGSEDPTVYSATSTKKLHKEPATLIKAIDGDTVKLMYKGQPMTFRLLLVDT
    NCTC8325        SQTDNGVNRSGSEDPTVYSATSTKKLHKEPATLIKAIDGDTVKLMYKGQPMTFRLLLVDT
    Newman          SQTDNGVNRSGSEDPTVYSATSTKKLHKEPATLIKAIDGDTVKLMYKGQPMTFRLLLVDT
    USA300_FPR3757  SQTDNGVNRSGSEDPTVYSATSTKKLHKEPATLIKAIDGDTVKLMYKGQPMTFRLLLVDT
                    ************************************************************

    COL             PETKHPKKGVEKYGPEASAFTKKMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNE
    N315            PETKHPKKGVEKYGPEASAFTKKMVENANKIEVEFDKGQRTDKYGRGLAYIYADGKMVNE
    NCTC8325        PETKHPKKGVEKYGPEASAFTKKMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNE
    Newman          PETKHPKKGVEKYGPEASAFTKKMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNE
    USA300_FPR3757  PETKHPKKGVEKYGPEASAFTKKMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNE
                    ****************************:*******************************

    COL             ALVRQGLAKVAYVYKPNNTHEQLLRKSEAQAKKEKLNIWSEDNADSGQ
    N315            ALVRQGLAKVAYVYKPNNTHEQLLRKSEAQAKKEKLNIWSEDNADSGQ
    NCTC8325        ALVRQGLAKVAYVYKPNNTHEQLLRKSEAQAKKEKLNIWSEDNADSGQ
    Newman          ALVRQGLAKVAYVYKPNNTHEQLLRKSEAQAKKEKLNIWSEDNADSGQ
    USA300_FPR3757  ALVRQGLAKVAYVYKPNNTHEQLLRKSEAQAKKEKLNIWSEDNADSGQ
                    ************************************************