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Summary[edit source | edit]

  • pan ID?: SAUPAN002802000
  • symbol?: cspC
  • description?: cold-shock protein C

      descriptions from strain specific annotations:

    • cold-shock protein C
    • CSD family cold shock protein
    • cold-shock DNA-binding domain-containing protein
    • DNA-binding cold-shock protein
    • cold-shock protein CSD family protein
    • Cold shock protein CspC
    • putative cold shock protein
    • cold-shock DNA-binding domain protein, CspC
    • cold shock protein CspA
    • Cold-shock DNA-binding protein family
  • strand?: +
  • coordinates?: 3269928..3270128
  • synteny block?: BlockID0019930
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    SA0747 (cspC)
    NCTC8325:
    Newman:
    NWMN_0761 (cspC)
    USA300_FPR3757:
    04-02981:
    SA2981_0771 (cspC)
    08BA02176:
    C248_0886 (cspC)
    11819-97:
    MS7_0844
    71193:
    ST398NM01_0873
    ECT-R 2:
    ECTR2_744
    ED133:
    SAOV_0833 (cspC)
    ED98:
    SAAV_0762
    HO 5096 0412:
    SAEMRSA15_07190 (cspC)
    JH1:
    SaurJH1_0833
    JH9:
    SaurJH9_0817
    JKD6008:
    SAA6008_00808 (cspC)
    JKD6159:
    SAA6159_00748 (cspC)
    LGA251:
    SARLGA251_07240 (cspC)
    M013:
    M013TW_0783
    MRSA252:
    SAR0848 (cspC)
    MSHR1132:
    SAMSHR1132_07410
    MSSA476:
    SAS0757
    Mu3:
    SAHV_0812 (cspC)
    Mu50:
    SAV0816 (cspC)
    MW2:
    MW0770 (cspC)
    RF122:
    SAB0749 (cspC)
    ST398:
    SAPIG0873
    T0131:
    SAT0131_00893 (groEL)
    TCH60:
    HMPREF0772_12386 (cspA2)
    TW20:
    SATW20_08670 (cspC)
    USA300_TCH1516:
    USA300HOU_0824 (csp)
    VC40:
    SAVC_03610

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MNNGTVKWFNAEKGFGFIEREDGSDVFVHFSAIAEDGYKSLEEGQKVEFDIVEGDRGEQA
    N315            MNNGTVKWFNAEKGFGFIEREDGSDVFVHFSAIAEDGYKSLEEGQKVEFDIVEGDRGEQA
    NCTC8325        MNNGTVKWFNAEKGFGFIEREDGSDVFVHFSAIAEDGYKSLEEGQKVEFDIVEGDRGEQA
    Newman          MNNGTVKWFNAEKGFGFIEREDGSDVFVHFSAIAEDGYKSLEEGQKVEFDIVEGDRGEQA
    USA300_FPR3757  MNNGTVKWFNAEKGFGFIEREDGSDVFVHFSAIAEDGYKSLEEGQKVEFDIVEGDRGEQA
                    ************************************************************

    COL             ANVVKM
    N315            ANVVKM
    NCTC8325        ANVVKM
    Newman          ANVVKM
    USA300_FPR3757  ANVVKM
                    ******