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Summary[edit source | edit]

  • pan ID?: SAUPAN002817000
  • symbol?: aroD
  • description?: 3-dehydroquinase

      descriptions from strain specific annotations:

    • 3-dehydroquinase
    • 3-dehydroquinate dehydratase
    • 3-dehydroquinate dehydratase, type I
    • 3-dehydroquinate dehydratase I AroC I
    • putative type I 3-dehydroquinase
  • strand?: +
  • coordinates?: 3277060..3277776
  • synteny block?: BlockID0020080
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL0873 (aroD)
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_0784 (aroC)
    08BA02176:
    C248_0897
    11819-97:
    MS7_0855 (aroD)
    71193:
    ST398NM01_0883
    ECT-R 2:
    ECTR2_755 (aroD)
    ED133:
    SAOV_0845
    ED98:
    SAAV_0775 (aroD)
    HO 5096 0412:
    SAEMRSA15_07310
    JH1:
    SaurJH1_0845
    JH9:
    SaurJH9_0828
    JKD6008:
    SAA6008_00819 (aroD)
    JKD6159:
    SAA6159_00760 (aroD)
    LGA251:
    SARLGA251_07350
    M013:
    M013TW_0794
    MRSA252:
    SAR0860
    MSHR1132:
    SAMSHR1132_07530
    MSSA476:
    SAS0769
    Mu3:
    SAHV_0825
    Mu50:
    SAV0829
    MW2:
    MW0782
    RF122:
    SAB0760
    ST398:
    SAPIG0883 (aroD)
    T0131:
    SAT0131_00903 (sdrH)
    TCH60:
    HMPREF0772_12374 (aroD)
    TW20:
    SATW20_08780
    USA300_TCH1516:
    USA300HOU_0836 (aroD)
    VC40:
    SAVC_03670

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MTHVEVVATIAPQLSIEETLIQKINHRIDAIDVLELRIDQIENVTVDQVAEMITKLKVMQ
    N315            MTHVEVVATIAPQLSIEETLIQKINHRIDAIDVLELRIDQIENVTVDQVAEMITKLKVMQ
    NCTC8325        MTHVEVVATIAPQLSIEETLIQKINHRIDAIDVLELRIDQIENVTVDQVAEMITKLKVMQ
    Newman          MTHVEVVATIAPQLSIEETLIQKINHRIDAIDVLELRIDQIENVTVDQVAEMITKLKVMQ
    USA300_FPR3757  MTHVEVVATIAPQLSIEETLIQKINHRIDAIDVLELRIDQIENVTVDQVAEMITKLKVMQ
                    ************************************************************

    COL             DSFKLLVTYRTKLQGGYGQFTNDSYLNLISDLANINGIDMIDIEWQADIDIEKHQRIITH
    N315            DSFKLLVTYRTKLQGGYGQFINDLYLNLISDLANINGIDMIDIEWQADIDIEKHQRIIKH
    NCTC8325        DSFKLLVTYRTKLQGGYGQFTNDSYLNLISDLANINGIDMIDIEWQADIDIEKHQRIITH
    Newman          DSFKLLVTYRTKLQGGYGQFTNDSYLNLISDLANINGIDMIDIEWQADIDIEKHQRIITH
    USA300_FPR3757  DSFKLLVTYRTKLQGGYGQFTNDSYLNLISDLANINGIDMIDIEWQADIDIEKHQRIITH
                    ******************** ** **********************************.*

    COL             LQQYNKEVVISHHNFESTPPLDELQFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAMST
    N315            LQQYNKEVVISHHNFESTPPLDELQFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAMST
    NCTC8325        LQQYNKEVVISHHNFESTPPLDELQFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAMST
    Newman          LQQYNKEVVISHHNFESTPPLDELQFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAMST
    USA300_FPR3757  LQQYNKEVVISHHNFESTPPLDELQFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAMST
                    ************************************************************

    COL             FSDTMDCKVVGISMSKLGLISRTAQGVFGGALTYGCIGVPQAPGQIDVTDLKAQVTLY
    N315            FSDTMDCKVVGISMSKLGLISRTAQGVFGGALTYGCIGEPQAPGQIDVTDLKAQVTLY
    NCTC8325        FSDTMDCKVVGISMSKLGLISRTAQGVFGGALTYGCIGVPQAPGQIDVTDLKAQVTLY
    Newman          FSDTMDCKVVGISMSKLGLISRTAQGVFGGALTYGCIGVPQAPGQIDVTDLKAQVTLY
    USA300_FPR3757  FSDTMDCKVVGISMSKLGLISRTAQGVFGGALTYGCIGVPQAPGQIDVTDLKAQVTLY
                    ************************************** *******************