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Summary[edit source | edit]

  • pan ID?: SAUPAN003059000
  • symbol?: rocD
  • description?: ornithine--oxo-acid transaminase

      descriptions from strain specific annotations:

    • ornithine--oxo-acid transaminase
    • Ornithine aminotransferase 2
    • Acetylornithine aminotransferase 2
    • Ornithine aminotransferase
  • strand?: +
  • coordinates?: 3449007..3450218
  • synteny block?: BlockID0021670
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL0960 (rocD)
    N315:
    SA0818 (rocD)
    NCTC8325:
    Newman:
    NWMN_0827 (rocD)
    USA300_FPR3757:
    04-02981:
    SA2981_0912 (rocD)
    08BA02176:
    C248_0956 (rocD)
    11819-97:
    MS7_0912
    71193:
    ST398NM01_0940
    ECT-R 2:
    ECTR2_813 (rocD)
    ED133:
    SAOV_0903
    ED98:
    SAAV_0918 (rocD)
    HO 5096 0412:
    SAEMRSA15_07870 (rocD)
    JH1:
    SaurJH1_0976 (rocD)
    JH9:
    SaurJH9_0957 (rocD)
    JKD6008:
    SAA6008_00910 (rocD)
    JKD6159:
    SAA6159_00816 (rocD)
    LGA251:
    SARLGA251_08750 (rocD)
    M013:
    M013TW_0876
    MRSA252:
    SAR0919 (rocD)
    MSHR1132:
    SAMSHR1132_08090
    MSSA476:
    SAS0827 (rocD)
    Mu3:
    SAHV_0952 (rocD)
    Mu50:
    SAV0957 (rocD)
    MW2:
    MW0839 (rocD)
    RF122:
    SAB0824 (rocD)
    ST398:
    SAPIG0940 (rocD)
    T0131:
    SAT0131_00989
    TCH60:
    HMPREF0772_12289 (rocD2)
    TW20:
    SATW20_09570 (rocD)
    USA300_TCH1516:
    USA300HOU_0916 (rocD)
    VC40:
    SAVC_03960 (rocD)

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MTKSEKIIELTNHYGAHNYLPLPIVISEAEGVWVKDPEGNKYMDMLSAYSAVNQGHRHPK
    N315            MTKSEKIIELTNHYGAHNYLPLPIVISEAEGVWVKDPEGNKYMDMLSAYSAVNQGHRHPK
    NCTC8325        MTKSEKIIELTNHYGAHNYLPLPIVISEAEGVWVKDPEGNKYMDMLSAYSAVNQGHRHPK
    Newman          MTKSEKIIELTNHYGAHNYLPLPIVISEAEGVWVKDPEGNKYMDMLSAYSAVNQGHRHPK
    USA300_FPR3757  MTKSEKIIELTNHYGAHNYLPLPIVISEAEGVWVKDPEGNKYMDMLSAYSAVNQGHRHPK
                    ************************************************************

    COL             IIQALKDQADKVTLVSRAFHSDNLGEWYEKICKLAGKDKALPMNTGAEAVETALKAARRW
    N315            IIQALKDQADKVTLVSRAFHSDNLGEWYEKICKLAGKDKALPMNTGAEAVETALKAARRW
    NCTC8325        IIQALKDQADKVTLVSRAFHSDNLGEWYEKICKLAGKDKALPMNTGAEAVETALKAARRW
    Newman          IIQALKDQADKVTLVSRAFHSDNLGEWYEKICKLAGKDKALPMNTGAEAVETALKAARRW
    USA300_FPR3757  IIQALKDQADKVTLVSRAFHSDNLGEWYEKICKLAGKDKALPMNTGAEAVETALKAARRW
                    ************************************************************

    COL             AYDVKGIEPNKAEIIAFNGNFHGRTMAPVSLSSEAEYQRGYGPLLDGFRKVDFGDVDALK
    N315            AYDVKGIEPNKAEIIAFNGNFHGRTMAPVSLSSEAEYQRGYGPLLDGFRKVDFGDVDALK
    NCTC8325        AYDVKGIEPNKAEIIAFNGNFHGRTMAPVSLSSEAEYQRGYGPLLDGFRKVDFGDVDALK
    Newman          AYDVKGIEPNKAEIIAFNGNFHGRTMAPVSLSSEAEYQRGYGPLLDGFRKVDFGDVDALK
    USA300_FPR3757  AYDVKGIEPNKAEIIAFNGNFHGRTMAPVSLSSEAEYQRGYGPLLDGFRKVDFGDVDALK
                    ************************************************************

    COL             AAINENTAAVLVEPIQGEAGINIPPEGYLKAIRELCDEHNVLFIADEIQAGLGRSGKLFA
    N315            AAINENTAAVLVEPIQGEAGINIPPEGYLKAIRELCDEHNVLFIADEIQAGLGRSGKLFA
    NCTC8325        AAINENTAAVLVEPIQGEAGINIPPEGYLKAIRELCDEHNVLFIADEIQAGLGRSGKLFA
    Newman          AAINENTAAVLVEPIQGEAGINIPPEGYLKAIRELCDEHNVLFIADEIQAGLGRSGKLFA
    USA300_FPR3757  AAINENTAAVLVEPIQGEAGINIPPEGYLKAIRELCDEHNVLFIADEIQAGLGRSGKLFA
                    ************************************************************

    COL             TDWDNVKPDVYILGKALGGGVFPISVVLADKEVLDVFTPGSHGSTFGGNPLACAASIAAL
    N315            TDWDNVKPDVYILGKALGGGVFPISVVLADKEVLDVFTPGSHGSTFGGNPLACAASIAAL
    NCTC8325        TDWDNVKPDVYILGKALGGGVFPISVVLADKEVLDVFTPGSHGSTFGGNPLACAASIAAL
    Newman          TDWDNVKPDVYILGKALGGGVFPISVVLADKEVLDVFTPGSHGSTFGGNPLACAASIAAL
    USA300_FPR3757  TDWDNVKPDVYILGKALGGGVFPISVVLADKEVLDVFTPGSHGSTFGGNPLACAASIAAL
                    ************************************************************

    COL             DVIVDEDLPGRSLELGDYFKEQLKQIDHPSIKEVRGRGLFIGVELNESARPYCEALKEEG
    N315            DVIVDEDLPGRSLELGDYFKEQLKQIDHPSIKEVRGRGLFIGVELNESARPYCEALKEEG
    NCTC8325        DVIVDEDLPGRSLELGDYFKEQLKQIDHPSIKEVRGRGLFIGVELNESARPYCEALKEEG
    Newman          DVIVDEDLPGRSLELGDYFKEQLKQIDHPSIKEVRGRGLFIGVELNESARPYCEALKEEG
    USA300_FPR3757  DVIVDEDLPGRSLELGDYFKEQLKQIDHPSIKEVRGRGLFIGVELNESARPYCEALKEEG
                    ************************************************************

    COL             LLCKETHDTVIRFAPPLIITKEELDLALEKIRHVFQ
    N315            LLCKETHDTVIRFAPPLIITKEELDLALEKIRHVFQ
    NCTC8325        LLCKETHDTVIRFAPPLIITKEELDLALEKIRHVFQ
    Newman          LLCKETHDTVIRFAPPLIITKEELDLALEKIRHVFQ
    USA300_FPR3757  LLCKETHDTVIRFAPPLIITKEELDLALEKIRHVFQ
                    ************************************