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Summary[edit source | edit]

  • pan ID?: SAUPAN003060000
  • symbol?: gudB
  • description?: NAD-specific glutamate dehydrogenase

      descriptions from strain specific annotations:

    • NAD-specific glutamate dehydrogenase
    • Glu/Leu/Phe/Val dehydrogenase
    • glutamate dehydrogenase, NAD-specific
    • NAD-specific glutamate dehydrogenase (NAD-GDH)
    • putative NAD-specific glutamate dehydrogenase
  • strand?: +
  • coordinates?: 3450285..3451571
  • synteny block?: BlockID0021680
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL0961 (gluD)
    N315:
    SA0819 (gudB)
    NCTC8325:
    Newman:
    NWMN_0828 (gudB)
    USA300_FPR3757:
    04-02981:
    SA2981_0913 (gudB)
    08BA02176:
    C248_0957
    11819-97:
    MS7_0913 (gluD)
    71193:
    ST398NM01_0941
    ECT-R 2:
    ECTR2_814
    ED133:
    SAOV_0904
    ED98:
    SAAV_0919 (gluD)
    HO 5096 0412:
    SAEMRSA15_07880
    JH1:
    SaurJH1_0977
    JH9:
    SaurJH9_0958
    JKD6008:
    SAA6008_00911 (gudB)
    JKD6159:
    SAA6159_00817 (gudB)
    LGA251:
    SARLGA251_08760
    M013:
    M013TW_0877
    MRSA252:
    SAR0920
    MSHR1132:
    SAMSHR1132_08100
    MSSA476:
    SAS0828
    Mu3:
    SAHV_0953 (gudB)
    Mu50:
    SAV0958 (gudB)
    MW2:
    MW0840 (gudB)
    RF122:
    SAB0825
    ST398:
    SAPIG0941
    T0131:
    SAT0131_00990
    TCH60:
    HMPREF0772_12288 (gluD)
    TW20:
    SATW20_09580
    USA300_TCH1516:
    USA300HOU_0917 (gudB)
    VC40:
    SAVC_03965

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             --------------MTENNNLVTSTQGIIKEALHKLGFDEGMYDLIKEPLRMLQVRIPVR
    N315            --------------MTENNNLVTSTQGIIKEALHKLGFDEGMYDLIKEPLRMLQVRIPVR
    NCTC8325        --------------MTENNNLVTSTQGIIKEALHKLGFDEGMYDLIKEPLRMLQVRIPVR
    Newman          MKAKSLGKEEAKRIMTENNNLVTSTQGIIKEALHKLGFDEGMYDLIKEPLRMLQVRIPVR
    USA300_FPR3757  --------------MTENNNLVTSTQGIIKEALHKLGFDEGMYDLIKEPLRMLQVRIPVR
                                  **********************************************

    COL             MDDGTVKTFTGYRAQHNDAVGPTKGGVRFHPDVDEEEVKALSMWMTLKCGIVNLPYGGGK
    N315            MDDGTVKTFTGYRAQHNDAVGPTKGGVRFHPDVDEEEVKALSMWMTLKCGIVNLPYGGGK
    NCTC8325        MDDGTVKTFTGYRAQHNDAVGPTKGGVRFHPDVDEEEVKALSMWMTLKCGIVNLPYGGGK
    Newman          MDDGTVKTFTGYRAQHNDAVGPTKGGVRFHPDVDEEEVKALSMWMTLKCGIVNLPYGGGK
    USA300_FPR3757  MDDGTVKTFTGYRAQHNDAVGPTKGGVRFHPDVDEEEVKALSMWMTLKCGIVNLPYGGGK
                    ************************************************************

    COL             GGIVCDPRQMSIHEVERLSRGYVRAISQFVGPNKDIPAPDVFTNSQIMAWMMDEYSALDK
    N315            GGIVCDPRQMSIHEVERLSRGYVRAISQFVGPNKDIPAPDVFTNSQIMAWMMDEYSALDK
    NCTC8325        GGIVCDPRQMSIHEVERLSRGYVRAISQFVGPNKDIPAPDVFTNSQIMAWMMDEYSALDK
    Newman          GGIVCDPRQMSIHEVERLSRGYVRAISQFVGPNKDIPAPDVFTNSQIMAWMMDEYSALDK
    USA300_FPR3757  GGIVCDPRQMSIHEVERLSRGYVRAISQFVGPNKDIPAPDVFTNSQIMAWMMDEYSALDK
                    ************************************************************

    COL             FNSPGFITGKPIVLGGSHGRDRSTALGVVIAIEQAAKRRNMQIEGAKVVIQGFGNAGSFL
    N315            FNSPGFITGKPIVLGGSHGRDRSTALGVVIAIEQAAKRRNMQIEGAKVVIQGFGNAGSFL
    NCTC8325        FNSPGFITGKPIVLGGSHGRDRSTALGVVIAIEQAAKRRNMQIEGAKVVIQGFGNAGSFL
    Newman          FNSPGFITGKPIVLGGSHGRDRSTALGVVIAIEQAAKRRNMQIEGAKVVIQGFGNAGSFL
    USA300_FPR3757  FNSPGFITGKPIVLGGSHGRDRSTALGVVIAIEQAAKRRNMQIEGAKVVIQGFGNAGSFL
                    ************************************************************

    COL             AKFLYDLGAKIVGISDAYGALHDPNGLDIDYLLDRRDSFGTVTNLFEETISNKELFELDC
    N315            AKFLYDLGAKIVGISDAYGALHDPNGLDIDYLLDRRDSFGTVTNLFEETISNKELFELDC
    NCTC8325        AKFLYDLGAKIVGISDAYGALHDPNGLDIDYLLDRRDSFGTVTNLFEETISNKELFELDC
    Newman          AKFLYDLGAKIVGISDAYGALHDPNGLDIDYLLDRRDSFGTVTNLFEETISNKELFELDC
    USA300_FPR3757  AKFLYDLGAKIVGISDAYGALHDPNGLDIDYLLDRRDSFGTVTNLFEETISNKELFELDC
                    ************************************************************

    COL             DILVPAAISNQITEDNAHDIKASIVVEAANGPTTPEATRILTERGILLVPDVLASAGGVT
    N315            DILVPAAISNQITEDNAHDIKASIVVEAANGPTTPEATRILTERGILLVPDVLASAGGVT
    NCTC8325        DILVPAAISNQITEDNAHDIKASIVVEAANGPTTPEATRILTERGILLVPDVLASAGGVT
    Newman          DILVPAAISNQITEDNAHDIKASIVVEAANGPTTPEATRILTERGILLVPDVLASAGGVT
    USA300_FPR3757  DILVPAAISNQITEDNAHDIKASIVVEAANGPTTPEATRILTERGILLVPDVLASAGGVT
                    ************************************************************

    COL             VSYFEWVQNNQGYYWSEEEVNEKLREKLEAAFDTIYELSQNRKIDMRLAAYIIGIKRTAE
    N315            VSYFEWVQNNQGYYWSEEEVNEKLREKLEAAFDTIYELSQNRKIDMRLAAYIIGIKRTAE
    NCTC8325        VSYFEWVQNNQGYYWSEEEVNEKLREKLEAAFDTIYELSQNRKIDMRLAAYIIGIKRTAE
    Newman          VSYFEWVQNNQGYYWSEEEVNEKLREKLEAAFDTIYELSQNRKIDMRLAAYIIGIKRTAE
    USA300_FPR3757  VSYFEWVQNNQGYYWSEEEVDEKLREKLEAAFDTIYELSQNRKIDMRLAAYIIGIKRTAE
                    ********************:***************************************

    COL             AARYRGWA
    N315            AARYRGWA
    NCTC8325        AARYRGWA
    Newman          AARYRGWA
    USA300_FPR3757  AARYRGWA
                    ********