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⊟Summary[edit | edit source]
- pan ID?: SAUPAN003152000
- symbol?: opp4B
- synonym:
- description?: oligopeptide ABC transporter permease
- oligopeptide ABC transporter permease
- peptide ABC transporter permease
- ABC transporter permease
- oligopeptide transport system permease OppB
- oligopeptide transport system permease protein OppB, putative
- oligopeptide ABC superfamily ATP binding cassette transporter, membrane protein
- oligopeptide transport system permease protein OppB
- binding--dependent transport system inner membrane component family protein
- binding-protein-dependent transport system inner membrane component family protein
- binding-protein-dependent transport systems inner membrane component
- oligopeptide ABC transporter membrane protein
- pseudogene
- putative oligopeptide transport system permease
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 3536677..3546835
- synteny block?: BlockID0022410
- occurrence?: in 85% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_0949 (oppB)
08BA02176:
—
11819-97:
MS7_0950
6850:
RSAU_000870
71193:
—
ECT-R 2:
ECTR2_849
ED133:
SAOV_0940
ED98:
SAAV_0955
HO 5096 0412:
SAEMRSA15_08230
JH1:
SaurJH1_1012
JH9:
SaurJH9_0993
JKD6008:
SAA6008_00947
JKD6159:
—
LGA251:
SARLGA251_09100 (appB)
M013:
M013TW_0916
MRSA252:
SAR0959
MSHR1132:
SAMSHR1132_08420
MSSA476:
SAS0864
Mu3:
SAHV_0989 (oppB)
Mu50:
SAV0994 (oppB)
MW2:
MW0876 (oppB)
RF122:
—
ST398:
—
T0131:
SAT0131_01027
TCH60:
HMPREF0772_12247 (appB)
TW20:
SATW20_09920 (appB)
USA300_TCH1516:
USA300HOU_0952 (oppB3)
VC40:
SAVC_04140
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MIKLILKRLGLMIPLLILISIVVFSLAIIQPGDPFSDLQNGKIKQEAINAQREKLGLNDS
N315 MLKLILKRLGLMIPLLILISIVVFSLAIIQPGDPFSDLQNGKIKQEAINAQREKLGLNDS
NCTC8325 MIKLILKRLGLMIPLLILISIVVFSLAIIQPGDPFSDLQNGKIKQEAINAQREKLGLNDS
Newman MIKLILKRLGLMIPLLILISIVVFSLAIIQPGDPFSDLQNGKIKQEAINAQREKLGLNDS
USA300_FPR3757 MIKLILKRLGLMIPLLILISIVVFSLAIIQPGDPFSDLQNGKIKQEAINAQREKLGLNDS
*:**********************************************************
COL IPHQYIRWVNHVIHGDLGESIKYKRPVIDVIEERIPNTILLGAMSLIITYIISFALGITS
N315 IPHQYIRWVNHVIHGDLGESIKYKRPVIDVIEERIPNTILLGAMSLIITYIISFALGITS
NCTC8325 IPHQYIRWVNHVIHGDLGESIKYKRPVIDVIEERIPNTILLGAMSLIITYIISFALGITS
Newman IPHQYIRWVNHVIHGDLGESIKYKRPVIDVIEERIPNTILLGAMSLIITYIISFALGITS
USA300_FPR3757 IPHQYIRWVNHVIHGDLGESIKYKRPVIDVIEERIPNTILLGAMSLIITYIISFALGITS
************************************************************
COL GRYSYSLTDYTVQIFNYLMLAIPSFIAGVFAIFIFSFELQWFPFQGSVDINLKEGTFEYY
N315 GRYSYSLTDYTVQIFNYLMLAIPSFIAGVFAIFIFSFELQWFPFQGSVDINLKEGTFEYY
NCTC8325 GRYSYSLTDYTVQIFNYLMLAIPSFIAGVFAIFIFSFELQWFPFQGSVDINLKEGTFEYY
Newman GRYSYSLTDYTVQIFNYLMLAIPSFIAGVFAIFIFSFELQWFPFQGSVDINLKEGTFEYY
USA300_FPR3757 GRYSYSLTDYTVQIFNYLMLAIPSFIAGVFAIFIFSFELQWFPFQGSVDINLKEGTFEYY
************************************************************
COL MSKIYHTFLPAFTLGLLSTAGYIQYLRNDIIENSKKDYVLTARSKGLSMNKIYNKHILRN
N315 MSKIYHTFLPALTLGLLSTAGYIQYLRNDIIENSKKDYVLTARSKGLSMNKIYNKHILRN
NCTC8325 MSKIYHTFLPAFTLGLLSTAGYIQYLRNDIIENSKKDYVLTARSKGLSMNKIYNKHILRN
Newman MSKIYHTFLPAFTLGLLSTAGYIQYLRNDIIENSKKDYVLTARSKGLSMNKIYNKHILRN
USA300_FPR3757 MSKIYHTFLPAFTLGLLSTAGYIQYLRNDIIENSKKDYVLTARSKGLSMNKIYNKHILRN
***********:************************************************
COL SLIPIITFLGADIVSILGGAVITETIFSYNGIGKLFLESVIGQDYPLMMALTLFFSFLGL
N315 SLIPIITFLGADIVSILGGAVITETIFSYNGIGKLFLESVIGQDYPLMMALTLFFSFLGL
NCTC8325 SLIPIITFLGADIVSILGGAVITETIFSYNGIGKLFLESVIGQDYPLMMALTLFFSFLGL
Newman SLIPIITFLGADIVSILGGAVITETIFSYNGIGKLFLESVIGQDYPLMMALTLFFSFLGL
USA300_FPR3757 SLIPIITFLGADIVSILGGAVITETIFSYNGIGKLFLESVIGQDYPLMMALTLFFSFLGL
************************************************************
COL LGNLISDITYGFIDPRIRSN
N315 LGNLISDITYGFIDPRIRSN
NCTC8325 LGNLISDITYGFIDPRIRSN
Newman LGNLISDITYGFIDPRIRSN
USA300_FPR3757 LGNLISDITYGFIDPRIRSN
********************