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NCBI: 26-AUG-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus N315
  • locus tag: SA0853 [new locus tag: SA_RS04835 ]
  • pan locus tag?: SAUPAN003152000
  • symbol: oppB
  • pan gene symbol?: opp-4B
  • synonym:
  • product: oligopeptide transport system permease OppB

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SA0853 [new locus tag: SA_RS04835 ]
  • symbol: oppB
  • product: oligopeptide transport system permease OppB
  • replicon: chromosome
  • strand: +
  • coordinates: 967655..968617
  • length: 963
  • essential: no DEG other strains

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    ATGCTTAAATTAATACTTAAAAGGTTAGGGTTAATGATCCCGTTACTAATTTTAATCTCA
    ATAGTTGTATTTTCATTAGCAATCATACAACCAGGAGATCCATTTTCAGATTTACAAAAC
    GGTAAAATAAAACAAGAAGCAATAAATGCACAAAGGGAAAAGTTAGGCCTCAACGACTCA
    ATACCACATCAATATATTAGATGGGTCAATCATGTTATACATGGTGATTTAGGGGAGTCA
    ATCAAATATAAGAGGCCGGTAATTGATGTTATTGAGGAAAGAATTCCAAATACAATATTA
    CTCGGTGCTATGTCATTAATTATTACTTATATTATCTCATTTGCTTTAGGAATAACGTCA
    GGTAGATATTCTTACAGTTTGACTGATTATACTGTGCAAATATTTAATTATTTGATGTTA
    GCTATTCCATCTTTTATTGCGGGAGTATTTGCAATTTTTATTTTTTCTTTTGAATTACAA
    TGGTTTCCGTTTCAAGGTTCTGTTGATATTAACCTTAAAGAAGGTACTTTTGAATATTAT
    ATGAGTAAAATTTATCATACATTTTTGCCTGCATTAACTTTAGGATTATTATCTACTGCT
    GGTTATATTCAATATTTACGTAATGATATTATTGAAAATTCTAAAAAAGATTATGTATTG
    ACGGCAAGGTCAAAAGGATTATCTATGAATAAAATTTATAATAAACATATATTGAGAAAT
    TCTTTAATACCTATTATTACATTTTTAGGTGCTGATATTGTAAGTATTTTAGGTGGAGCT
    GTGATTACTGAGACTATCTTTTCATATAACGGTATCGGTAAATTATTTTTAGAATCGGTA
    ATAGGTCAAGACTATCCATTAATGATGGCATTAACGTTATTTTTCTCATTTTTAGGTTTA
    TTGGGTAATTTGATTTCTGATATTACTTATGGATTTATAGATCCAAGAATTAGAAGTAAC
    TAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    963

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SA0853 [new locus tag: SA_RS04835 ]
  • symbol: OppB
  • description: oligopeptide transport system permease OppB
  • length: 320
  • theoretical pI: 8.94727
  • theoretical MW: 36089.2
  • GRAVY: 0.46

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    MetabolismTransport and binding proteinsCations and iron carrying compoundsnickel ABC transporter, permease subunit NikB (TIGR02789; EC 3.6.3.24; HMM-score: 238.6)
    MetabolismTransport and binding proteinsCations and iron carrying compoundsnickel ABC transporter, permease subunit NikC (TIGR02790; EC 3.6.3.24; HMM-score: 24.2)
    MetabolismTransport and binding proteinsAnionsphosphate ABC transporter, permease protein PstA (TIGR00974; HMM-score: 19.9)
    MetabolismTransport and binding proteinsAnionsphosphate ABC transporter, permease protein PstC (TIGR02138; HMM-score: 19)
  • TheSEED:  
    Membrane TransportABC transportersABC transporter oligopeptide (TC 3.A.1.5.1) Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) 
  • PFAM:
    BPD_transp_1 (CL0404) BPD_transp_1; Binding-protein-dependent transport system inner membrane component (PF00528; HMM-score: 140)
    IT (CL0182) CitMHS; Citrate transporter (PF03600; HMM-score: 11.3)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 6
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular Possibility: 0.17
    • Signal Peptide Possibility: 0.5
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.31
    • Ymax_pos: 37
    • Cmax: 0.244
    • Cmax_pos: 37
    • Smax: 0.575
    • Smax_pos: 2
    • Smean: 0.402
    • D: 0.346
  • predicted transmembrane helices (TMHMM): 6

Accession numbers[edit source | edit]

  • GI: 15926583 NCBI
  • RefSeq: NP_374116 NCBI
  • UniProt:

Protein sequence[edit source | edit]

  • MLKLILKRLGLMIPLLILISIVVFSLAIIQPGDPFSDLQNGKIKQEAINAQREKLGLNDSIPHQYIRWVNHVIHGDLGESIKYKRPVIDVIEERIPNTILLGAMSLIITYIISFALGITSGRYSYSLTDYTVQIFNYLMLAIPSFIAGVFAIFIFSFELQWFPFQGSVDINLKEGTFEYYMSKIYHTFLPALTLGLLSTAGYIQYLRNDIIENSKKDYVLTARSKGLSMNKIYNKHILRNSLIPIITFLGADIVSILGGAVITETIFSYNGIGKLFLESVIGQDYPLMMALTLFFSFLGLLGNLISDITYGFIDPRIRSN

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator: CodY
    CodY (TF) important in Amino acid metabolismRegPrecise

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]