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Summary[edit source | edit]

  • pan ID?: SAUPAN003163000
  • symbol?: trpS
  • description?: tryptophanyl-tRNA synthetase

      descriptions from strain specific annotations:

    • tryptophanyl-tRNA synthetase
    • proteobacterial type
    • putative tryptophanyl-tRNA synthetase
    • tryptophan--tRNA ligase
  • strand?: -
  • coordinates?: 3556710..3557699
  • synteny block?: BlockID0022510
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL1001 (trpS)
    N315:
    SA0855 (trpS)
    NCTC8325:
    Newman:
    NWMN_0866 (trpS)
    USA300_FPR3757:
    04-02981:
    SA2981_0951 (trpS)
    08BA02176:
    C248_1019 (trpS)
    11819-97:
    MS7_0952 (trpS)
    71193:
    ST398NM01_0992
    ECT-R 2:
    ECTR2_851 (trpS)
    ED133:
    SAOV_0942c
    ED98:
    SAAV_0957
    HO 5096 0412:
    SAEMRSA15_08260 (trpS)
    JH1:
    SaurJH1_1014
    JH9:
    SaurJH9_0995
    JKD6008:
    SAA6008_00949 (trpS)
    JKD6159:
    SAA6159_00853 (trpS)
    LGA251:
    SARLGA251_09120 (trpS)
    M013:
    M013TW_0919
    MRSA252:
    SAR0964 (trpS)
    MSHR1132:
    SAMSHR1132_08440
    MSSA476:
    SAS0866
    Mu3:
    SAHV_0991 (trpS)
    Mu50:
    SAV0996 (trpS)
    MW2:
    MW0878 (trpS)
    RF122:
    SAB0863c (trpS)
    ST398:
    SAPIG0992 (trpS)
    T0131:
    SAT0131_01031
    TCH60:
    HMPREF0772_12240 (trpS)
    TW20:
    SATW20_09940 (trpS)
    USA300_TCH1516:
    USA300HOU_0954 (trpS)
    VC40:
    SAVC_04150

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             METLFSGIQPSGIPTIGNYIGALKQFVDVQNDYDCYFCIVDQHAITMPQDRLKLRKQTRQ
    N315            METLFSGIQPSGIPTIGNYIGALKQFVDVQNDYDCYFCIVDQHAITMPQDRLKLRKQTRQ
    NCTC8325        METLFSGIQPSGIPTIGNYIGALKQFVDVQNDYDCYFCIVDQHAITMPQDRLKLRKQTRQ
    Newman          METLFSGIQPSGIPTIGNYIGALKQFVDVQNDYDCYFCIVDQHAITMPQDRLKLRKQTRQ
    USA300_FPR3757  METLFSGIQPSGIPTIGNYIGALKQFVDVQNDYDCYFCIVDQHAITMPQDRLKLRKQTRQ
                    ************************************************************

    COL             LAAIYLASGIDPDKATLFIQSEVPAHVQAGWMLTTIASVGELERMTQYKDKAQKAVEGIP
    N315            LAAIYLASGIDPDKATLFIQSEVPAHVQAGWMLTTIASVGELERMTQYKDKAQKAVEGIP
    NCTC8325        LAAIYLASGIDPDKATLFIQSEVPAHVQAGWMLTTIASVGELERMTQYKDKAQKAVEGIP
    Newman          LAAIYLASGIDPDKATLFIQSEVPAHVQAGWMLTTIASVGELERMTQYKDKAQKAVEGIP
    USA300_FPR3757  LAAIYLASGIDPDKATLFIQSEVPAHVQAGWMLTTIASVGELERMTQYKDKAQKAVEGIP
                    ************************************************************

    COL             AGLLTYPPLMAADIVLYNTNIVPVGDDQKQHIELTRNLVDRFNSRYNDVLVKPEIRMPKV
    N315            AGLLTYPPLMAADIVLYNTNIVPVGDDQKQHIELTRNLVDRFNSRYNDVLVKPEIRMPKV
    NCTC8325        AGLLTYPPLMAADIVLYNTNIVPVGDDQKQHIELTRNLVDRFNSRYNDVLVKPEIRMPKV
    Newman          AGLLTYPPLMAADIVLYNTNIVPVGDDQKQHIELTRNLVDRFNSRYNDVLVKPEIRMPKV
    USA300_FPR3757  AGLLTYPPLMAADIVLYNTNIVPVGDDQKQHIELTRNLVDRFNSRYNDVLVKPEIRMPKV
                    ************************************************************

    COL             GGRVMSLQDPTRKMSKSDDNAKNFISLLDEPNVAAKKIKSAVTDSDGIIKFDRDNKPGIT
    N315            GGRVMSLQDPTRKMSKSDDNAKNFISLLDEPNVAAKKIKSAVTDSDGIIKFDRDNKPGIT
    NCTC8325        GGRVMSLQDPTRKMSKSDDNAKNFISLLDEPNVAAKKIKSAVTDSDGIIKFDRDNKPGIT
    Newman          GGRVMSLQDPTRKMSKSDDNAKNFISLLDEPNVAAKKIKSAVTDSDGIIKFDRDNKPGIT
    USA300_FPR3757  GGRVMSLQDPTRKMSKSDDNAKNFISLLDEPNVAAKKIKSAVTDSDGIIKFDRDNKPGIT
                    ************************************************************

    COL             NLISIYAGLTDMPIKDIEAKYEGEGYGKFKGDLAEIVKAFLVEFQEKYESFYNSDKLDDI
    N315            NLISIYAGLTDMPIKDIEAKYEGEGYGKFKGDLAEIVKAFLVEFQEKYESFYNSDKLDDI
    NCTC8325        NLISIYAGLTDMPIKDIEAKYEGEGYGKFKGDLAEIVKAFLVEFQEKYESFYNSDKLDDI
    Newman          NLISIYAGLTDMPIKDIEAKYEGEGYGKFKGDLAEIVKAFLVEFQEKYESFYNSDKLDDI
    USA300_FPR3757  NLISIYAGLTDMPIKDIEAKYEGEGYGKFKGDLAEIVKAFLVEFQEKYESFYNSDKLDDI
                    ************************************************************

    COL             LDQGRDKAHKVSFKTVKKMEKAMGLGRKR
    N315            LDQGRDKAHKVSFKTVKKMEKAMGLGRKR
    NCTC8325        LDQGRDKAHKVSFKTVKKMEKAMGLGRKR
    Newman          LDQGRDKAHKVSFKTVKKMEKAMGLGRKR
    USA300_FPR3757  LDQGRDKAHKVSFKTVKKMEKAMGLGRKR
                    *****************************