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Summary[edit source | edit]

  • pan ID?: SAUPAN003320000
  • symbol?: pdhD
  • description?: dihydrolipoamide dehydrogenase

      descriptions from strain specific annotations:

    • dihydrolipoamide dehydrogenase
    • Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex
    • dihydrolipoamide dehydrogenase component of pyruvate dehydrogenase E3
    • dihydrolipoyl dehydrogenase
    • dihydrolipoamide dehydrogenase PdhD
  • strand?: +
  • coordinates?: 3687943..3689349
  • synteny block?: BlockID0024040
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL1105 (pdhD)
    N315:
    SA0946 (pdhD)
    NCTC8325:
    Newman:
    NWMN_0962 (pdhD)
    USA300_FPR3757:
    04-02981:
    SA2981_1053 (pdhD)
    08BA02176:
    C248_1123 (pdhD)
    11819-97:
    MS7_1053
    71193:
    ST398NM01_1093
    ECT-R 2:
    ECTR2_951 (lpdA)
    ED133:
    SAOV_1040
    ED98:
    SAAV_1061 (pdhD)
    HO 5096 0412:
    SAEMRSA15_09260 (pdhD)
    JH1:
    SaurJH1_1178
    JH9:
    SaurJH9_1156
    JKD6008:
    SAA6008_01051 (pdhD)
    JKD6159:
    SAA6159_00952 (pdhD)
    LGA251:
    SARLGA251_10090 (pdhD)
    M013:
    M013TW_1028
    MRSA252:
    SAR1070 (pdhD)
    MSHR1132:
    SAMSHR1132_09430
    MSSA476:
    SAS1031
    Mu3:
    SAHV_1088 (pdhD)
    Mu50:
    SAV1096 (pdhD)
    MW2:
    MW0979 (pdhD)
    RF122:
    SAB0962 (pdhD)
    ST398:
    SAPIG1093 (lpdA)
    T0131:
    SAT0131_01134
    TCH60:
    HMPREF0772_12136 (lpd2)
    TW20:
    SATW20_10910 (pdhD)
    USA300_TCH1516:
    USA300HOU_1039 (pdhD)
    VC40:
    SAVC_04640

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MVVGDFPIETDTIVIGAGPGGYVAAIRAAQLGQKVTIVEKGNLGGVCLNVGCIPSKALLH
    N315            MVVGDFPIETDTIVIGAGPGGYVAAIRAAQLGQKVTIVEKGNLGGVCLNVGCIPSKALLH
    NCTC8325        MVVGDFPIETDTIVIGAGPGGYVAAIRAAQLGQKVTIVEKGNLGGVCLNVGCIPSKALLH
    Newman          MVVGDFPIETDTIVIGAGPGGYVAAIRAAQLGQKVTIVEKGNLGGVCLNVGCIPSKALLH
    USA300_FPR3757  MVVGDFPIETDTIVIGAGPGGYVAAIRAAQLGQKVTIVEKGNLGGVCLNVGCIPSKALLH
                    ************************************************************

    COL             ASHRFVEAQHSENLGVIAESVSLNFQKVQEFKSSVVNKLTGGVEGLLKGNKVNIVKGEAY
    N315            ASHRFVEAQHSENLGVIAESVSLNFQKVQEFKSSVVNKLTGGVEGLLKGNKVNIVKGEAY
    NCTC8325        ASHRFVEAQHSENLGVIAESVSLNFQKVQEFKSSVVNKLTGGVESLLKGNKVNIVKGEAY
    Newman          ASHRFVEAQHSENLGVIAESVSLNFQKVQEFKSSVVNKLTGGVEGLLKGNKVNIVKGEAY
    USA300_FPR3757  ASHRFVEAQHSENLGVIAESVSLNFQKVQEFKSSVVNKLTGGVEGLLKGNKVNIVKGEAY
                    ********************************************.***************

    COL             FVDNNSLRVMDEKSAQTYNFKNAIIATGSRPIEIPNFKFGKRVIDSTGALNLQEVPGKLV
    N315            FVDNNSLRVMDEKSAQTYNFKNAIIATGSRPIEIPNFKFGKRVIDSTGALNLQEVPGKLV
    NCTC8325        FVDNNSLRVMDEKSAQTYNFKNAIIATGSRPIEIPNFKFGKRVIDSTGALNLQEVPGKLV
    Newman          FVDNNSLRVMDEKSAQTYNFKNAIIATGSRPIEIPNFKFGKRVIDSTGALNLQEVPGKLV
    USA300_FPR3757  FVDNNSLRVMDEKSAQTYNFKNGIIATGSRPIEIPNFKFGKRVIDSTGALNLQEVPGKLV
                    **********************.*************************************

    COL             VVGGGYIGSELGTAFANFGSEVTILEGAKDILGGFEKQMTQPVKKGMKEKGVEIVTEAMA
    N315            VVGGGYIGSELGTAFANFGSEVTILEGAKDILGGFEKQMTQPVKKGMKEKGVEIVTEAMA
    NCTC8325        VVGGGYIGSELGTAFANFGSEVTILEGAKDILGGFEKQMTQPVKKGMKEKGVEIVTEAMA
    Newman          VVGGGYIGSELGTAFANFGSEVTILEGAKDILGGFEKQMTQPVKKGMKEKGVEIVTEAMA
    USA300_FPR3757  VVGGGYIGSELGTAFANFGSEVTILEGAKDILGGFEKQMTQPVKKGMKEKGVEIVTEAMA
                    ************************************************************

    COL             KSAEETDNGVKVTYEAKGEEKTIEADYVLVTVGRRPNTDELGLEELGVKFADRGLLEVDK
    N315            KSAEETDNGVKVTYEAKGEEKTIEADYVLVTVGRRPNTDELGLEELGVKFADRGLLEVDK
    NCTC8325        KSAEETDNGVKVTYEAKGEEKTIEADYVLVTVGRRPNTDELGLEELGVKFADRGLLEVDK
    Newman          KSAEETDNGVKVTYEAKGEEKTIEADYVLVTVGRRPNTDELGLEELGVKFADRGLLEVDK
    USA300_FPR3757  KSAEETDNGVKVTYEAKGEEKTIEADYVLVTVGRRPNTDELGLEELGVKFADRGLLEVDK
                    ************************************************************

    COL             QSRTSISNIYAIGDIVPGLPLAHKASYEAKVAAEAIDGQAAEVDYIGMPAVCFTEPELAT
    N315            QSRTSISNIYAIGDIVPGLPLAHKASYEAKVAAEAIDGQAAEVDYIGMPAVCFTEPELAT
    NCTC8325        QSRTSISNIYAIGDIVPGLPLAHKASYEAKVAAEAIDGQAAEVDYIGMPAVCFTEPELAT
    Newman          QSRTSISNIYAIGDIVPGLPLAHKASYEAKVAAEAIDGQAAEVDYIGMPAVCFTEPELAT
    USA300_FPR3757  QSRTSISNIYAIGDIVPGLPLAHKASYEAKVAAEAIDGQAAEVDYIGMPAVCFTEPELAT
                    ************************************************************

    COL             VGYSEAQAKEEGLAIKASKFPYAANGRALSLDDTNGFVKLITLKEDDTLIGAQVVGTGAS
    N315            VGYSEAQAKEEGLAIKASKFPYAANGRALSLDDTNGFVKLITLKEDDTLIGAQVVGTGAS
    NCTC8325        VGYSEAQAKEEGLAIKASKFPYAANGRALSLDDTNGFVKLITLKEDDTLIGAQVVGTGAS
    Newman          VGYSEAQAKEEGLAIKASKFPYAANGRALSLDDTNGFVKLITLKEDDTLIGAQVVGTGAS
    USA300_FPR3757  VGYSEAQAKEEGLAIKASKFPYAANGRALSLDDTNGFVKLITLKEDDTLIGAQVVGTGAS
                    ************************************************************

    COL             DIISELGLAIEAGMNAEDIALTIHAHPTLGEMTMEAAEKAIGYPIHTM
    N315            DIISELGLAIEAGMNAEDIALTIHAHPTLGEMTMEAAEKAIGYPIHTM
    NCTC8325        DIISELGLAIEAGMNAEDIALTIHAHPTLGEMTMEAAEKAIGYPIHTM
    Newman          DIISELGLAIEAGMNAEDIALTIHAHPTLGEMTMEAAEKAIGYPIHTM
    USA300_FPR3757  DIISELGLAIEAGMNAEDIALTIHAHPTLGEMTMEAAEKAIGYPIHTM
                    ************************************************