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Summary[edit source | edit]

  • pan ID?: SAUPAN003343000
  • symbol?: ctaB
  • description?: protoheme IX farnesyltransferase

      descriptions from strain specific annotations:

    • protoheme IX farnesyltransferase
    • Heme O synthase, protoheme IX farnesyltransferase COX10-CtaB
    • putative protoheme IX farnesyltransferase
    • heme A IX farnesyltransferase
  • strand?: +
  • coordinates?: 3712253..3713167
  • synteny block?: BlockID0024270
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL1125 (ctaB)
    N315:
    SA0965 (ctaB)
    NCTC8325:
    Newman:
    NWMN_0981 (cyoD)
    USA300_FPR3757:
    04-02981:
    SA2981_1073 (ctaB)
    08BA02176:
    C248_1143 (ctaB)
    11819-97:
    MS7_1073 (cyoE)
    71193:
    ST398NM01_1113
    ECT-R 2:
    ECTR2_971 (cyoE)
    ED133:
    SAOV_1058
    ED98:
    SAAV_1082 (ctaB)
    HO 5096 0412:
    SAEMRSA15_09460 (ctaB)
    JH1:
    SaurJH1_1198
    JH9:
    SaurJH9_1176
    JKD6008:
    SAA6008_01071 (ctaB)
    JKD6159:
    SAA6159_00971 (ctaB)
    LGA251:
    SARLGA251_10290 (ctaB)
    M013:
    M013TW_1048
    MRSA252:
    SAR1090 (ctaB)
    MSHR1132:
    SAMSHR1132_09630
    MSSA476:
    SAS1051
    Mu3:
    SAHV_1108 (ctaB)
    Mu50:
    SAV1116 (ctaB)
    MW2:
    MW0999 (ctaB)
    RF122:
    SAB0981 (ctaB)
    ST398:
    SAPIG1113 (cyoE)
    T0131:
    SAT0131_01155 (lacA)
    TCH60:
    HMPREF0772_12116 (cyoE)
    TW20:
    SATW20_11110 (ctaB)
    USA300_TCH1516:
    USA300HOU_1054 (ctaB)
    VC40:
    SAVC_04745

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             -MSKEHTLSQNISRVNFKELQQIIKMGLVQGNLIPAFAGAWLAVVMTNHSFLSSIPQILL
    N315            MMSKEHTLSQNISRVNFKELQQIIKMGLVQGNLIPAFAGAWLAVVMTNHSFLSSIPQILL
    NCTC8325        -MSKEHTLSQNISRVNFKELQQIIKMGLVQGNLIPAFAGAWLAVVMTNHSFLSSIPQILL
    Newman          -MSKEHTLSQNISRVNFKELQQIIKMGLVQGNLIPAFAGAWLAVVMTNHSFLSSIPQILL
    USA300_FPR3757  -MSKEHTLSQNISRVNFKELQQIIKMGLVQGNLIPAFAGAWLAVVMTNHSFLSSIPQILL
                     ***********************************************************

    COL             MLFGSTLIMGGACALNNYYDQDIDRIMPSKQNRPTVNNRITDQNLLLLSFGMMLVGEICL
    N315            MLFGSTLIMGGACALNNYYDQDIDRIMPSKQNRPTVNNRITDQNLLLLSFGMMLVGEICL
    NCTC8325        MLFGSTLIMGGACALNNYYDQDIDRIMPSKQNRPTVNNRITDQNLLLLSFGMMLVGEICL
    Newman          MLFGSTLIMGGACALNNYYDQDIDRIMPSKQNRPTVNNRITDQNLLLLSFGMMLVGEICL
    USA300_FPR3757  MLFGSTLIMGGACALNNYYDQDIDRIMPSKQNRPTVNNRITDQNLLLLSFGMMLVGEICL
                    ************************************************************

    COL             FLLNIPSGVLGLMGIVGYVSYYSIWSKRHTTWNTVIGSFPGAVPPLIGWVAIEGQISLTA
    N315            FLLNIPSGVLGLMGIVGYVSYYSIWSKRHTTWNTVIGSFPGAVPPLIGWVAIEGQISLTA
    NCTC8325        FLLNIPSGVLGLMGIVGYVSYYSIWSKRHTTWNTVIGSFPGAVPPLIGWVAIEGQISLTA
    Newman          FLLNIPSGVLGLMGIVGYVSYYSIWSKRHTTWNTVIGSFPGAVPPLIGWVAIEGQISLTA
    USA300_FPR3757  FLLNIPSGVLGLMGIVGYVSYYSIWSKRHTTWNTVIGSFPGAVPPLIGWVAIEGQISLTA
                    ************************************************************

    COL             IALFLVVFCWQPIHFYALAIKRKDEYALANIPMLPSVKGFKRTRVSMFIWLIILLPVPLL
    N315            IALFLVVFCWQPIHFYALAIKRKDEYALANIPMLPSVKGFKRTRVSMFIWLIILLPVPLL
    NCTC8325        IALFLVVFCWQPIHFYALAIKRKDEYALANIPMLPSVKGFKRTRVSMFIWLIILLPVPLL
    Newman          IALFLVVFCWQPIHFYALAIKRKDEYALANIPMLPSVKGFKRTRVSMFIWLIILLPVPLL
    USA300_FPR3757  IALFLVVFCWQPIHFYALAIKRKDEYALANIPMLPSVKGFKRTRVSMFIWLIILLPVPLL
                    ************************************************************

    COL             LINLGVVFVVLATLLNLGWIALGLTTFKKNSDQTKWATQMFIYSLNYLVIFFVLAVIVSL
    N315            LINLGVVFVVLATLLNLGWIALGLTTFKKNSDQTKWATQMFIYSLNYLVIFFVLAVIVSL
    NCTC8325        LINLGVVFVVLATLLNLGWIALGLTTFKKNSDQTKWATQMFIYSLNYLVIFFVLAVIVSL
    Newman          LINLGVVFVVLATLLNLGWIALGLTTFKKNSDQTKWATQMFIYSLNYLVIFFVLAVIVSL
    USA300_FPR3757  LINLGVVFVVLATLLNLGWIALGLTTFKKNSDQTKWATQMFIYSLNYLVIFFVLAVIVSL
                    ************************************************************

    COL             LTLI
    N315            LTLI
    NCTC8325        LTLI
    Newman          LTLI
    USA300_FPR3757  LTLI
                    ****