From AureoWiki
Jump to: navigation, search

Summary[edit source | edit]

  • pan ID?: SAUPAN003440000
  • symbol?: psmβ1
  • description?: anti protein (phenol soluble modulin)

      descriptions from strain specific annotations:

    • anti protein (phenol soluble modulin)
    • antibacterial protein
    • antibacterial protein (phenol soluble modulin)
    • haemolytic family protein
    • hemolytic family protein
    • antibacterial protein 3
    • cytolytic toxin PSM beta1
  • strand?: +
  • coordinates?: 3788345..3788488
  • synteny block?: BlockID0025210
  • occurrence?: in 88% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_1131
    08BA02176:
    C248_1202
    11819-97:
    MS7_1130
    71193:
    ST398NM01_1170
    ECT-R 2:
    ECTR2_1029
    ED133:
    SAOV_1174
    ED98:
    SAAV_1144
    HO 5096 0412:
    SAEMRSA15_10060
    JH1:
    SaurJH1_1257
    JH9:
    SaurJH9_1232
    JKD6008:
    SAA6008_01127
    JKD6159:
    SAA6159_01024
    LGA251:
    SARLGA251_10840
    M013:
    M013TW_1107
    MRSA252:
    SAR1150
    MSHR1132:
    SAMSHR1132_10150
    MSSA476:
    SAS1107a
    Mu3:
    Mu50:
    MW2:
    MW1056
    RF122:
    ST398:
    SAPIG1170
    T0131:
    SAT0131_01218 (rplX)
    TCH60:
    HMPREF0772_12058
    TW20:
    SATW20_11670
    USA300_TCH1516:
    USA300HOU_1112
    VC40:
    SAVC_05025

Genome Viewer[edit source | edit]

COL chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MEGLFNAIKDTVTAAINNDGAKLGTSIVSIVENGVGLLGKLFGF
    NCTC8325        MEGLFNAIKDTVTAAINNDGAKLGTSIVSIVENGVGLLGKLFGF
    Newman          MEGLFNAIKDTVTAAINNDGAKLGTSIVSIVENGVGLLGKLFGF
    USA300_FPR3757  MEGLFNAIKDTVTAAINNDGAKLGTSIVSIVENGVGLLGKLFGF
                    ********************************************