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Summary[edit source | edit]

  • pan ID?: SAUPAN003442000
  • symbol?:
  • description?: noncanonical pyrimidine nucleotidase, YjjG family

      descriptions from strain specific annotations:

    • noncanonical pyrimidine nucleotidase, YjjG family
    • HAD superfamily hydrolase
    • 2-haloalkanoic acid dehalogenase
    • 5'-nucleotidase
    • 5-nucleotidase YjjG
    • 5'-ribonucleotide phosphohydrolase
    • HAD family hydrolase
    • HAD superfamily (subfamily IA) hydrolase
    • haloacid dehalgenase-like hydrolase
    • haloacid dehalogenase
    • haloacid dehalogenase-like family hydrolase
    • putative HAD-hydrolase yfnB
    • putative haloacid dehalogenase-like hydrolase
  • strand?: +
  • coordinates?: 3788805..3789501
  • synteny block?: BlockID0025230
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_1133 (yjjG)
    08BA02176:
    C248_1204
    11819-97:
    MS7_1132 (yfnB)
    71193:
    ST398NM01_1172
    ECT-R 2:
    ECTR2_1031
    ED133:
    SAOV_1176
    ED98:
    SAAV_1146
    HO 5096 0412:
    SAEMRSA15_10080
    JH1:
    SaurJH1_1259
    JH9:
    SaurJH9_1234
    JKD6008:
    SAA6008_01129
    JKD6159:
    SAA6159_01026
    LGA251:
    SARLGA251_10860
    M013:
    M013TW_1109
    MRSA252:
    SAR1151
    MSHR1132:
    SAMSHR1132_10170
    MSSA476:
    SAS1109
    Mu3:
    SAHV_1165
    Mu50:
    SAV1175
    MW2:
    MW1058
    RF122:
    SAB1039
    ST398:
    SAPIG1172
    T0131:
    SAT0131_01220 (rpsQ)
    TCH60:
    HMPREF0772_12057
    TW20:
    SATW20_11690
    USA300_TCH1516:
    USA300HOU_1114
    VC40:
    SAVC_05035

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MGKLGYKNILIDFDDTIVDFYDAEEWAFHYMANVFNHKATKDDFLTFKKINHQHWEAFQQ
    N315            ---MGYKNILIDFDDTIVDFYDAEEWAFHYMANVFNHKATKDDFLTFKKINHQHWEAFQQ
    NCTC8325        MGKLGYKNILIDFDDTIVDFYDAEEWAFHYMANVFNHKATKDDFLTFKKINHQHWEAFQQ
    Newman          MGKLGYKNILIDFDDTIVDFYDAEEWAFHYMANVFNHKATKDDFLTFKKINHQHWEAFQQ
    USA300_FPR3757  MGKLGYKNILIDFDDTIVDFYDAEEWAFHYMANVFNHKATKDDFLTFKKINHQHWEAFQQ
                       :********************************************************

    COL             NKLTKSEVLSERFVNYFKHHQMEVDGHRADVLFRNGLAEAKVKYFDQTLETIVELSKRHD
    N315            NKLTKSEVLSERFVNYFKHHQMEVDGHRADVLFRNGLAEAKVKYFDQTLETIVELSKRHD
    NCTC8325        NKLTKSEVLSERFVNYFKHHQMEVDGHRADVLFRNGLAEAKVKYFDQTLETIVELSKRHD
    Newman          NKLTKSEVLSERFVNYFKHHQMEVDGHRADVLFRNGLAEAKVKYFDQTLETIVELSKRHD
    USA300_FPR3757  NKLTKSEVLSERFVNYFKHHQMEVDGHRADVLFRNGLAEAKVKYFDQTLETIVELSKRHD
                    ************************************************************

    COL             LYIVTNGVTETQKRRLNQTPLHKYIKKIFISEETGYQKPNPEFFNYVFNDIGEDERQHSI
    N315            LYIVTNGVTETQKRRLNQTPLHKYIKKIFISEETGYQKPNPEFFNYVFNDIGEDERQHSI
    NCTC8325        LYIVTNGVTETQKRRLNQTPLHKYIKKIFISEETGYQKPNPEFFNYVFNDIGEDERQHSI
    Newman          LYIVTNGVTETQKRRLNQTPLHKYIKKIFISEETGYQKPNPEFFNYVFNDIGEDERQHSI
    USA300_FPR3757  LYIVTNGVTETQKRRLNQTPLHKYIKKIFISEETGYQKPNPEFFNYVFNDIGEDERQHSI
                    ************************************************************

    COL             IVGDSLTSDILGGINAGIATCWFNFRGFDHNPGIIPDYEINSWKQLNDIVR
    N315            IVGDSLTSDILGGINAGIATCWFNFRGFDHNPGIIPDYEINSWKQLNDIVR
    NCTC8325        IVGDSLTSDILGGINAGIATCWFNFRGFDHNPGIIPDYEINSWKQLNDIVR
    Newman          IVGDSLTSDILGGINAGIATCWFNFRGFDHNPGIIPDYEINSWKQLNDIVR
    USA300_FPR3757  IVGDSLTSDILGGINAGIATCWFNFRGFDHNPGIIPDYEINSWKQLNDIVR
                    ***************************************************