Jump to navigation
Jump to search
⊟Summary[edit | edit source]
- pan ID?: SAUPAN003459000
- symbol?: —
- synonym:
- description?: YggS family pyridoxal phosphate enzyme
- YggS family pyridoxal phosphate enzyme
- amino acid racemase-related protein
- YggS family pyridoxal phosphate-dependent enzyme
- alanine racemase domain-containing protein
- enzyme with a TIM-barrel fold
- protein YlmE
- Pyridoxal-5'-phosphate family protein
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 3803827..3804528
- synteny block?: BlockID0025390
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1146
08BA02176:
C248_1217
11819-97:
MS7_1145
6850:
RSAU_001069
71193:
ST398NM01_1186
ECT-R 2:
ECTR2_1044
ED133:
SAOV_1189
ED98:
SAAV_1159
HO 5096 0412:
SAEMRSA15_10210
JH1:
SaurJH1_1272
JH9:
SaurJH9_1247
JKD6008:
SAA6008_01142
JKD6159:
SAA6159_01039
LGA251:
SARLGA251_10990
M013:
M013TW_1122
MRSA252:
SAR1164
MSHR1132:
SAMSHR1132_10300
MSSA476:
SAS1122
Mu3:
SAHV_1178
Mu50:
SAV1188
MW2:
MW1071
RF122:
SAB1052
ST398:
SAPIG1186
T0131:
SAT0131_01235
TCH60:
HMPREF0772_12044 (ylmE)
TW20:
SATW20_11820
USA300_TCH1516:
USA300HOU_1125
VC40:
SAVC_05105
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MRVKDNLQQISTQINDKSEKNNFSTKPNVIAVTKYVTIERAKEAYEAGIRHFGENRLEGF
N315 MRVKDNLQQISTQINDKSEKNNFSTKPNVIAVTKYVTIERAKEAYEAGIRHFGENRLEGF
NCTC8325 --MKDNLQQISTQINDKSEKNNFSTKPNVIAVTKYVTIERAKEAYEAGIRHFGENRLEGF
Newman MRVKDNLQQISTQINDKSEKNNFSTKPNVIAVTKYVTIERAKEAYEAGIRHFGENRLEGF
USA300_FPR3757 --MKDNLQQISTQINDKSEKNNFSTKPNVIAVTKYVTIERAKEAYEAGIRHFGENRLEGF
:*********************************************************
COL FQKKEALPSDAVIHFIGSLQSRKVKDVINDVDYFHALDRLSLAKEINKRAEHKIKCFLQV
N315 FQKKEALPSDAVIHFIGSLQSRKVKDVINDVDYFHALDRLSLAKEINKRAEHKIKCFLQV
NCTC8325 FQKKEALPSDAVIHFIGSLQSRKVKDVINDVDYFHALDRLSLAKEINKRAEHKIKCFLQV
Newman FQKKEALPSDAVIHFIGSLQSRKVKDVINDVDYFHALDRLSLAKEINKRAEHKIKCFLQV
USA300_FPR3757 FQKKEALPSDAVIHFIGSLQSRKVKDVINDVDYFHALDRLSLAKEINKRAEHKIKCFLQV
************************************************************
COL NVSGEASKHGIALEDVDQFIDDLKKYDKIEIVGLMTMAPLTDDEAYIRSLFKQLRLKKEE
N315 NVSGEASKHGIALEDVDQFIDDLKKYDKIEIVGLMTMAPLTDDEAYIRSLFKQLRLKKEE
NCTC8325 NVSGEASKHGIALEDVDQFIDDLKKYDKIEIVGLMTMAPLTDDEAYIRSLFKQLRLKKEE
Newman NVSGEASKHGIALEDVDQFIDDLKKYDKIEIVGLMTMAPLTDDEAYIRSLFKQLRLKKEE
USA300_FPR3757 NVSGEASKHGIALEDVDQFIDDLKKYDKIEIVGLMTMAPLTDDEAYIRSLFKQLRLKKEE
************************************************************
COL IQRLNLEYAPCDELSMGMSNDYLIAVEEGATFVRIGTKLVGEEE
N315 IQRLNLEYAPCDELSMGMSNDYLIAVEEGATFVRIGTKLVGEEE
NCTC8325 IQRLNLEYAPCDELSMGMSNDYLIAVEEGATFVRIGTKLVGEEE
Newman IQRLNLEYAPCDELSMGMSNDYLIAVEEGATFVRIGTKLVGEEE
USA300_FPR3757 IQRLNLEYAPCDELSMGMSNDYLIAVEEGATFVRIGTKLVGEEE
********************************************