PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN003557000
• symbol^?: tsf
• synonym:
• description^?: elongation factor Ts

  descriptions from strain specific annotations:

  • elongation factor Ts
  • Translation elongation factor Ts
  • elongation factor EF1B
  • protein translation elongation factor Ts (EF-Ts)
• strand^?: +
• coordinates^?: 3891939..3892820
• synteny block^?: BlockID0026340
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL1276 (tsf)
N315:
SA1100 (tsf)
NCTC8325:
SAOUHSC_01234 (tsf)
Newman:
NWMN_1167 (tsf)
USA300_FPR3757:
SAUSA300_1150 (tsf)
04-02981:
SA2981_1215
08BA02176:
C248_1290 (tsf)
11819-97:
MS7_1215 (tsf)
6850:
RSAU_001139 (tsf)
71193:
ST398NM01_1259
ECT-R 2:
ECTR2_1113 (tsf)
ED133:
SAOV_1259 (tfs)
ED98:
SAAV_1232 (tsf)
HO 5096 0412:
SAEMRSA15_10900 (tsf)
JH1:
SaurJH1_1343 (tsf)
JH9:
SaurJH9_1317 (tsf)
JKD6008:
SAA6008_01212 (tsf)
JKD6159:
SAA6159_01112 (tsf)
LGA251:
SARLGA251_11680 (tsf)
M013:
M013TW_1197
MRSA252:
SAR1233 (tsf)
MSHR1132:
SAMSHR1132_11000
MSSA476:
SAS1191 (tsf)
Mu3:
SAHV_1247 (tsf)
Mu50:
SAV1257 (tsf)
MW2:
MW1140 (tsf)
RF122:
SAB1119 (tsf)
ST398:
SAPIG1259 (tsf)
T0131:
SAT0131_01310
TCH60:
HMPREF0772_11973 (tsf)
TW20:
SATW20_12510 (tsf)
USA300_TCH1516:
USA300HOU_1190 (tsf)
VC40:
SAVC_05450 (tsf)

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MATISAKLVKELREKTGAGMMDCKKALTETDGDIDKAIDYLREKGIAKAAKKADRIAAEG
  N315            MATISAKLVKELRKKTGAGMMDCKKALTETDGDIDKAIDYLREKGIAKAAKKADRIAAEG
  NCTC8325        MATISAKLVKELREKTGAGMMDCKKALTETDGDIDKAIDYLREKGIAKAAKKADRIAAEG
  Newman          MATISAKLVKELREKTGAGMMDCKKALTETDGDIDKAIDYLREKGIAKAAKKADRIAAEG
  USA300_FPR3757  MATISAKLVKELREKTGAGMMDCKKALTETDGDIDKAIDYLREKGIAKAAKKADRIAAEG
                  *************:**********************************************
  
  COL             LVHVETKGNDAVIVEINSETDFVARNEGFQELVKEIANQVLDTKAETVEALMETTLPNGK
  N315            LVHVETKGNDAVIVEINSETDFVARNEGFQELVKEIANQVLDTKAETVEALMETTLPNGK
  NCTC8325        LVHVETKGNDAVIVEINSETDFVARNEGFQELVKEIANQVLDTKAETVEALMETTLPNGK
  Newman          LVHVETKGNDAVIVEINSETDFVARNAGFQELVKEIANQVLDTKAETVEALMETTLPNGK
  USA300_FPR3757  LVHVETKGNDAVIVEINSETDFVARNEGFQELVKEIANQVLDTKAETVEALMETTLPNGK
                  ************************** *********************************
  
  COL             SVDERIKEAISTIGEKLSVRRFAIRTKTDNDAFGAYLHMGGRIGVLTVVEGSTDEEAARD
  N315            SVDERIKEAISTIGEKLSVRRFAIRTKTDNDAFGAYLHMGGRIGVLTVVEGSTDEEAARD
  NCTC8325        SVDERIKEAISTIGEKLSVRRFAIRTKTDNDAFGAYLHMGGRIGVLTVVEGSTDEEAARD
  Newman          SVDERIKEAISTIGEKLSVRRFAIRTKTDNDAFGAYLHMGGRIGVLTVVEGSTDEEAARD
  USA300_FPR3757  SVDERIKEAISTIGEKLSVRRFAIRTKTDNDAFGAYLHMGGRIGVLTVVEGSTDEEAARD
                  ************************************************************
  
  COL             VAMHIAAINPKYVSSEQVSEEEINHEREVLKQQALNEGKPENIVEKMVEGRLRKYLQEIC
  N315            VAMHIAAINPKYVSSEQVSEEEINHEREVLKQQALNEGKPENIVEKMVEGRLRKYLQEIC
  NCTC8325        VAMHIAAINPKYVSSEQVSEEEINHEREVLKQQALNEGKPENIVEKMVEGRLRKYLQEIC
  Newman          VAMHIAAINPKYVSSEQVSEEEINHEREVLKQQALNEGKPENIVEKMVEGRLRKYLQEIC
  USA300_FPR3757  VAMHIAAINPKYVSSEQVSEEEINHEREVLKQQALNEGKPENIVEKMVEGRLRKYLQEIC
                  ************************************************************
  
  COL             AVDQDFVKNPDVTVEAFLKTKGGKLVDFVRYEVGEGMEKREENFADEVKGQMK
  N315            AVDQDFVKNPDVTVEAFLKTKGGKLVDFVRYEVGEGMEKREENFADEVKGQMK
  NCTC8325        AVDQDFVKNPDVTVEAFLKTKGGKLVDFVRYEVGEGMEKREENFADEVKGQMK
  Newman          AVDQDFVKNPDVTVEAFLKTKGGKLVDFVRYEVGEGMEKREENFADEVKGQMK
  USA300_FPR3757  AVDQDFVKNPDVTVEAFLKTKGGKLVDFVRYEVGEGMEKREENFADEVKGQMK
                  *****************************************************